Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Argyrosomus japonicus [33]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF4629281Dinucleotide(AG)1428306..333592  bpPrimer
EF4629282Dinucleotide(AG)714336..349592  bpPrimer
EF4629191Dinucleotide(CA)1734104..137426  bpPrimer
EF4629221Dinucleotide(CT)61213..24903  bpPrimer
EF4629222Dinucleotide(GT)2040126..165903  bpPrimer
EF4629223Mononucleotide(A)1212192..203903  bpPrimer
EF4629224c*(C)13(CT)10*32774..805903  bpPrimer
EF4629201Trinucleotide(CTG)2060245..304373  bpPrimer
EF4629251Dinucleotide(AC)1428471..498662  bpPrimer
EF4629291Dinucleotide(AG)2448287..334657  bpPrimer
EF4629261Dinucleotide(AC)1734165..198453  bpPrimer
EF4629241Dinucleotide(GT)2652201..252446  bpPrimer
EF4629242Dinucleotide(GT)714286..299446  bpPrimer
EF4629161Mononucleotide(T)1010104..113612  bpPrimer
EF4629162Dinucleotide(AC)1836305..340612  bpPrimer
EF4629211Dinucleotide(TG)3264110..173392  bpPrimer
EF4629231Dinucleotide(AC)1326174..199478  bpPrimer
EF4629171Dinucleotide(CA)61270..81334  bpPrimer
EF4629172Dinucleotide(TC)1632209..240334  bpPrimer
EF4629181Dinucleotide(AC)1428615..6421070  bpPrimer
EF4629182Dinucleotide(AC)918645..6621070  bpPrimer
EF4629301Trinucleotide(GCT)515328..342723  bpPrimer
EF4629302Dinucleotide(TG)2346521..566723  bpPrimer
EF4629271Dinucleotide(CT)1326137..162514  bpPrimer
KP8885671Dinucleotide(AG)10208..27440  bpPrimer
KP8885672Dinucleotide(TG)714307..320440  bpPrimer
KP8885673Dinucleotide(TC)1020406..425440  bpPrimer
KT0318091Dinucleotide(AG)91811..28647  bpPrimer
KT0318092Dinucleotide(AC)1122457..478647  bpPrimer
KT0318093Dinucleotide(TC)1020619..638647  bpPrimer
KT0318081Dinucleotide(AG)11229..30426  bpPrimer
KT0318082Dinucleotide(TG)2142282..323426  bpPrimer
KT0318083Dinucleotide(CT)714382..395426  bpPrimer
KT0318084Dinucleotide(CT)816404..419426  bpPrimer
KP8885701Dinucleotide(AG)11228..29681  bpPrimer
KP8885702Dinucleotide(CT)1020654..673681  bpPrimer
KT0318101Dinucleotide(AG)10208..27654  bpPrimer
KT0318102Dinucleotide(GT)1326373..398654  bpPrimer
KT0318103Dinucleotide(CT)1020627..646654  bpPrimer
KP8885661Dinucleotide(AG)11226..27836  bpPrimer
KP8885662Dinucleotide(TC)1020808..827836  bpPrimer
KP8885691Dinucleotide(AG)9188..25310  bpPrimer
KP8885692Mononucleotide(T)2020182..201310  bpPrimer
KP8885693Dinucleotide(CT)1020283..302310  bpPrimer
KP8885681Composite(AG)14(A)10388..45927  bpPrimer
KP8885682Dinucleotide(AC)612915..926927  bpPrimer
KY1771691Dinucleotide(CT)1122391..412418  bpPrimer
KY1771721Dinucleotide(AG)9188..25819  bpPrimer
KY1771722Dinucleotide(CT)918801..818819  bpPrimer
KY1771711Dinucleotide(AG)10205..24967  bpPrimer
KY1771712Dinucleotide(AC)1224710..733967  bpPrimer
KY1771761Dinucleotide(AG)9185..22576  bpPrimer
KY1771762Dinucleotide(TG)71488..101576  bpPrimer
KY1771763Dinucleotide(CT)714558..571576  bpPrimer
KY1771681Dinucleotide(GA)8161..16611  bpPrimer
KY1771682Dinucleotide(TC)1938566..603611  bpPrimer
KY1771741Dinucleotide(AG)8165..20254  bpPrimer
KY1771751Dinucleotide(AG)6125..16605  bpPrimer
KY1771752Dinucleotide(CT)918583..600605  bpPrimer
KY1771701Dinucleotide(AG)61214..25581  bpPrimer
KY1771702Dinucleotide(CT)816549..564581  bpPrimer
KY1771771Dinucleotide(AG)10205..24627  bpPrimer
KY1771772Dinucleotide(CT)816607..622627  bpPrimer
KY1771731Dinucleotide(GA)10208..27608  bpPrimer
KY1771732Dinucleotide(TC)918582..599608  bpPrimer
 
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