Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Apistus carinatus [39]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6621371Dinucleotide(CA)112282..103103  bpPrimer
AB6626901Dinucleotide(GT)71445..5868  bpPrimer
AB6623891Dinucleotide(CA)15301..3089  bpPrimer
AB6627861Dinucleotide(AC)112215..3637  bpPrimer
AB6622481Dinucleotide(CT)81654..6969  bpPrimer
AB6620121Dinucleotide(CA)14281..28294  bpPrimer
AB6618651Mononucleotide(A)101063..72383  bpPrimer
AB6618652Dinucleotide(CA)714207..220383  bpPrimer
AB6618653Dinucleotide(CT)918366..383383  bpPrimer
AB6619911Dinucleotide(AC)61250..61153  bpPrimer
AB6623311Dinucleotide(AC)91898..115230  bpPrimer
AB6624881Dinucleotide(TG)61230..4177  bpPrimer
AB6623091Dinucleotide(CA)7141..1461  bpPrimer
AB6628341Dinucleotide(CA)142837..6464  bpPrimer
AB6625341Dinucleotide(CA)112215..3636  bpPrimer
AB6624301Dinucleotide(CA)612154..165169  bpPrimer
AB6625601Dinucleotide(CT)153054..8383  bpPrimer
AB6624601Composite(CA)7(CT)72878..105105  bpPrimer
AB6622711Dinucleotide(AC)81630..4545  bpPrimer
AB6619681Dinucleotide(AC)1530105..134134  bpPrimer
AB6626471Dinucleotide(CA)112245..6672  bpPrimer
AB6619451Dinucleotide(AC)193836..7374  bpPrimer
AB6621561Dinucleotide(CA)15301..3058  bpPrimer
AB6619051Dinucleotide(CA)81640..55305  bpPrimer
AB6625131Dinucleotide(GT)81631..4646  bpPrimer
AB6623641Dinucleotide(CA)12241..2450  bpPrimer
AB6621801Dinucleotide(GT)61245..5681  bpPrimer
AB6626041Dinucleotide(CA)23461..4683  bpPrimer
AB6621991Dinucleotide(AC)14283..3050  bpPrimer
AB6622251Dinucleotide(AC)91856..73156  bpPrimer
AB6619231Dinucleotide(TG)22441..4493  bpPrimer
AB6624091Dinucleotide(AC)91816..33103  bpPrimer
AB6624092Dinucleotide(TC)81662..77103  bpPrimer
AB6624093Dinucleotide(TC)102084..103103  bpPrimer
AB6627411Dinucleotide(CA)61258..6994  bpPrimer
AB6620751Dinucleotide(TG)6121..1234  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow