Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Amphiprion polymnus [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY5239321Dinucleotide(TG)50100116..215450  bpPrimer
AY5239391Dinucleotide(TG)4998387..484588  bpPrimer
AY5239311Tetranucleotide(TATC)26104256..359738  bpPrimer
AY5239401Dinucleotide(GT)1224169..192351  bpPrimer
AY5239402Dinucleotide(GT)816329..344351  bpPrimer
AY5239301Tetranucleotide(TAGA)40160264..423654  bpPrimer
AY5239351Dinucleotide(TG)1836126..161609  bpPrimer
AY5239352Dinucleotide(GT)1224347..370609  bpPrimer
AY5239361Dinucleotide(TG)1224235..258514  bpPrimer
AY5239341Dinucleotide(TG)357073..142325  bpPrimer
AY5239331Dinucleotide(GT)3876131..206390  bpPrimer
AY5239371Dinucleotide(GT)1326106..131590  bpPrimer
AY5239381Dinucleotide(GT)163272..103491  bpPrimer
 
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