Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Amphiprion percula [24]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF3754931Tetranucleotide(GTCC)624131..154404  bpPrimer
EF3754921Tetranucleotide(GTCT)520178..197238  bpPrimer
EF3754961Dinucleotide(AC)612161..172346  bpPrimer
EF3754962Dinucleotide(CA)1938186..223346  bpPrimer
EF3754963Dinucleotide(AC)2040225..264346  bpPrimer
EF3754941Dinucleotide(TG)1632118..149222  bpPrimer
EF3754951Tetranucleotide(TCTT)176897..164238  bpPrimer
EF3754971Dinucleotide(AC)1020160..179416  bpPrimer
EF3754972c*(CA)27(CAGA)12*100181..280416  bpPrimer
EF3754973Dinucleotide(AC)1224288..311416  bpPrimer
EF3754981Composite(TATC)5(TGTC)1892197..288353  bpPrimer
EF3754982Tetranucleotide(GTCT)624290..313353  bpPrimer
KM1062291Dinucleotide(CA)153025..54250  bpPrimer
KM1062292Dinucleotide(AC)234656..101250  bpPrimer
KM1062261Dinucleotide(CA)3162130..191274  bpPrimer
KM1062231Tetranucleotide(TGGA)1352241..292409  bpPrimer
KM1062181Tetranucleotide(TTTA)936104..139500  bpPrimer
KM1062182Mononucleotide(T)1010157..166500  bpPrimer
KM1062183Mononucleotide(T)1212387..398500  bpPrimer
KM1062251Dinucleotide(TG)1326192..217496  bpPrimer
KM1062252Dinucleotide(TG)612220..231496  bpPrimer
KM1062151Dinucleotide(AG)102070..89423  bpPrimer
KM1062381Composite(CT)15(CA)166244..105303  bpPrimer
KM1062171Tetranucleotide(CTAT)2288187..274402  bpPrimer
KM1062191Dinucleotide(TG)61286..97376  bpPrimer
KM1062192Dinucleotide(CA)1020298..317376  bpPrimer
KM1062201Dinucleotide(TC)71475..88253  bpPrimer
KM1062202Dinucleotide(CA)132694..119253  bpPrimer
KM1062281Tetranucleotide(TATC)1664109..172290  bpPrimer
KM1062211Dinucleotide(AC)1122155..176394  bpPrimer
KM1062331Dinucleotide(TG)163260..91437  bpPrimer
KM1062241Dinucleotide(TG)1530121..150326  bpPrimer
KM1062161Dinucleotide(TG)1428190..217318  bpPrimer
KM1062162Dinucleotide(GT)1122297..318318  bpPrimer
KM1062221Tetranucleotide(GGAT)104095..134387  bpPrimer
KM1062222Tetranucleotide(TGGA)624138..161387  bpPrimer
KM1062271Tetranucleotide(ATCA)83222..53402  bpPrimer
KM1062272Tetranucleotide(AATC)156057..116402  bpPrimer
 
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