Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Amphiprion frenatus [13]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB9212271Hexanucleotide(CTTCAT)848229..276325  bpPrimer
AB9212321Pentanucleotide(TAAGA)1365119..183237  bpPrimer
AB9212361Pentanucleotide(TATAG)126066..125311  bpPrimer
AB9212331Trinucleotide(GCT)144259..100334  bpPrimer
AB9212311Pentanucleotide(ATTCT)1680164..243282  bpPrimer
AB9212381Tetranucleotide(TGGA)1872146..217290  bpPrimer
AB9212261Trinucleotide(TCA)1442132..173313  bpPrimer
AB9212351Tetranucleotide(TCTT)1872129..200231  bpPrimer
AB9212341Trinucleotide(TAG)1442220..261320  bpPrimer
AB9212371Trinucleotide(AAG)1133174..206322  bpPrimer
AB9212281Dinucleotide(AC)3366112..177299  bpPrimer
AB9212291Trinucleotide(ACA)92784..110321  bpPrimer
AB9212301Tetranucleotide(TTTC)239262..153215  bpPrimer
 
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