Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Amphiprion bicinctus [36]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC1931091Trinucleotide(ATT)103052..81233  bpPrimer
KC1931341Dinucleotide(CA)1326133..158300  bpPrimer
KC1931351Trinucleotide(CTG)103062..91206  bpPrimer
KC1931121Trinucleotide(ATT)1957212..268320  bpPrimer
KC1931221Dinucleotide(TG)112271..92180  bpPrimer
KC1931321Dinucleotide(AC)1224112..135324  bpPrimer
KC1931261Dinucleotide(CA)1326107..132216  bpPrimer
KC1931061Trinucleotide(TTA)123662..97300  bpPrimer
KC1931151Trinucleotide(AAT)1442140..181264  bpPrimer
KC1931051Dinucleotide(TG)112246..67200  bpPrimer
KC1931331Composite(GT)6(AT)103281..112203  bpPrimer
KC1931361Dinucleotide(GT)1020102..121216  bpPrimer
KC1931271Dinucleotide(AC)1224229..252297  bpPrimer
KC1931211Dinucleotide(AC)1326136..161211  bpPrimer
KC1931251Trinucleotide(CAG)1751127..177300  bpPrimer
KC1931371Dinucleotide(AC)1020231..250291  bpPrimer
KC1931131Trinucleotide(TTA)1442160..201318  bpPrimer
KC1931071Dinucleotide(TG)1836147..182219  bpPrimer
KC1931181Trinucleotide(TTA)185462..115205  bpPrimer
KC1931381Trinucleotide(GTG)103093..122197  bpPrimer
KC1931241Dinucleotide(AC)1020162..181233  bpPrimer
KC1931291Trinucleotide(AGG)103061..90173  bpPrimer
KC1931101Dinucleotide(CA)163279..110180  bpPrimer
KC1931081Dinucleotide(GA)132650..75190  bpPrimer
KC1931311Composite(AAC)9(AAT)105759..115231  bpPrimer
KC1931171Dinucleotide(CA)1224254..277321  bpPrimer
KC1931041Dinucleotide(TG)1020199..218296  bpPrimer
KC1931201Dinucleotide(AC)102099..118202  bpPrimer
KC1931191Dinucleotide(CA)1428183..210298  bpPrimer
KC1931161Dinucleotide(AC)1326125..150238  bpPrimer
KC1931301Dinucleotide(CA)1224122..145272  bpPrimer
KC1931111Dinucleotide(GT)132699..124294  bpPrimer
KC1931391Dinucleotide(CA)1326185..210291  bpPrimer
KC1931231Dinucleotide(AC)1428149..176287  bpPrimer
KC1931141Dinucleotide(GT)122445..68196  bpPrimer
KC1931281Dinucleotide(CA)1224124..147294  bpPrimer
 
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