Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Alepes djedaba [39]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB6624151Dinucleotide(CA)224414..5757  bpPrimer
AB6625671Dinucleotide(CT)91855..72102  bpPrimer
AB6625672Mononucleotide(C)141489..102102  bpPrimer
AB6626301Dinucleotide(AC)8161..1654  bpPrimer
AB6623711Composite(CT)11(CA)8381..3875  bpPrimer
AB6624941Dinucleotide(GT)8161..1657  bpPrimer
AB6620191Dinucleotide(CA)132625..50315  bpPrimer
AB6620811Dinucleotide(GT)8161..1638  bpPrimer
AB6621611Dinucleotide(CA)81634..4953  bpPrimer
AB6627931Dinucleotide(AC)61256..6768  bpPrimer
AB6622771Dinucleotide(AC)816100..115202  bpPrimer
AB6627701Dinucleotide(CA)1836105..140140  bpPrimer
AB6627471Dinucleotide(AC)112297..118163  bpPrimer
AB6625181Dinucleotide(GT)91822..3939  bpPrimer
AB6628411Trinucleotide(CCA)7218..28120  bpPrimer
AB6628412Trinucleotide(CCA)51538..52120  bpPrimer
AB6628413Dinucleotide(CA)102069..88120  bpPrimer
AB6626971Dinucleotide(GT)153035..6464  bpPrimer
AB6619511Dinucleotide(CA)153050..7980  bpPrimer
AB6626741Dinucleotide(TC)61244..55177  bpPrimer
AB6626742Dinucleotide(AC)61272..83177  bpPrimer
AB6620571Dinucleotide(AC)153049..78117  bpPrimer
AB6619121Dinucleotide(CA)61235..46273  bpPrimer
AB6619122Dinucleotide(AC)612233..244273  bpPrimer
AB6621421Dinucleotide(CA)112281..102233  bpPrimer
AB6621871Dinucleotide(TG)102022..4154  bpPrimer
AB6626101Dinucleotide(CA)11221..2245  bpPrimer
AB6627171Composite(TC)6(AC)103223..5455  bpPrimer
AB6621021Dinucleotide(GT)132641..6667  bpPrimer
AB6619751Dinucleotide(CA)714114..127461  bpPrimer
AB6619752Dinucleotide(CA)612142..153461  bpPrimer
AB6619753Dinucleotide(CA)612271..282461  bpPrimer
AB6619301Dinucleotide(GT)7141..1445  bpPrimer
AB6619302Dinucleotide(GT)61217..2845  bpPrimer
AB6622531Dinucleotide(AC)1326109..134135  bpPrimer
AB6621241Dinucleotide(AC)122413..36364  bpPrimer
 
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