Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Albula vulpes [13]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ8692521Dinucleotide(AC)71435..48358  bpPrimer
DQ8692522Dinucleotide(CA)112258..79358  bpPrimer
DQ8692481Dinucleotide(AC)714105..118223  bpPrimer
DQ8692482Dinucleotide(CA)1326120..145223  bpPrimer
DQ8692531Dinucleotide(CA)71473..86186  bpPrimer
DQ8692501Dinucleotide(GT)1122196..217701  bpPrimer
DQ8692581Dinucleotide(TG)112266..87266  bpPrimer
DQ8692551Dinucleotide(CT)816337..352379  bpPrimer
DQ8692471Dinucleotide(CA)612220..231611  bpPrimer
DQ8692511Dinucleotide(CT)122477..100385  bpPrimer
DQ8692512Dinucleotide(TC)714161..174385  bpPrimer
DQ8692591Dinucleotide(TG)112280..101467  bpPrimer
DQ8692592Dinucleotide(GT)1632103..134467  bpPrimer
DQ8692571Mononucleotide(T)2121180..200579  bpPrimer
DQ8692611Dinucleotide(TG)1530331..360576  bpPrimer
DQ8692612Dinucleotide(TG)612393..404576  bpPrimer
 
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