Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Cirrhinus mrigala [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EF1441201Dinucleotide(TG)81687..102108  bpPrimer
AF5179401Tetranucleotide(ATAG)72855..8292  bpPrimer
EF1441221Dinucleotide(AC)112274..95137  bpPrimer
EF1441261Dinucleotide(GT)12248..3158  bpPrimer
EF1441211Dinucleotide(CA)71421..34117  bpPrimer
EF1441271Dinucleotide(AC)9189..2687  bpPrimer
EF1441272Dinucleotide(GT)61272..8387  bpPrimer
EF1441241Trinucleotide(TCC)7211..2167  bpPrimer
EF1441191Dinucleotide(AC)91874..91124  bpPrimer
EF1441181Dinucleotide(TG)112254..75128  bpPrimer
EF1441251Dinucleotide(CA)61247..5884  bpPrimer
KJ1599341Composite(TG)11(TC)185862..119120  bpPrimer
KJ1599301Dinucleotide(AC)13266..3159  bpPrimer
KJ1599351Dinucleotide(GT)255040..89110  bpPrimer
KJ1599331Dinucleotide(AT)244817..64110  bpPrimer
KJ1599332Dinucleotide(GT)81666..81110  bpPrimer
KJ1599311Dinucleotide(AC)81633..4875  bpPrimer
KJ1599291Dinucleotide(GT)81632..4767  bpPrimer
KJ7131751Dinucleotide(AC)81640..55231  bpPrimer
KJ1599281Dinucleotide(AG)153013..42112  bpPrimer
KJ1599282Dinucleotide(TG)102044..63112  bpPrimer
 
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