Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Acanthopagrus latus [117]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AB7134381Dinucleotide(TG)2244398..441969  bpPrimer
AY1388141Trinucleotide(CTC)824161..184656  bpPrimer
DQ2224471Dinucleotide(CA)2040175..214497  bpPrimer
DQ2224421Dinucleotide(AC)3264105..168288  bpPrimer
AB7134321Dinucleotide(GT)153069..98453  bpPrimer
AB7134322Mononucleotide(A)1212121..132453  bpPrimer
AB7134323Dinucleotide(TG)3570228..297453  bpPrimer
AB7134331Trinucleotide(GAG)61855..72570  bpPrimer
AB7134332Trinucleotide(GAG)51576..90570  bpPrimer
AB7134333Trinucleotide(ATT)1648409..456570  bpPrimer
AY1388131Mononucleotide(A)111182..921342  bpPrimer
AY1388132Composite(GT)25(GC)662308..3691342  bpPrimer
DQ2224431Dinucleotide(AC)102018..37305  bpPrimer
DQ2224432Dinucleotide(CA)295839..96305  bpPrimer
AB7134351Dinucleotide(TG)612184..195572  bpPrimer
AB7134352Dinucleotide(TG)1734198..231572  bpPrimer
DQ2224441Dinucleotide(GT)204049..88187  bpPrimer
AB7134361Dinucleotide(AC)1428437..464945  bpPrimer
AB7134341Mononucleotide(T)1010113..122678  bpPrimer
AB7134342Mononucleotide(C)1313213..225678  bpPrimer
AB7134343Dinucleotide(AC)1224227..250678  bpPrimer
AB7134344Dinucleotide(CA)612377..388678  bpPrimer
DQ2224511Dinucleotide(TG)204096..135509  bpPrimer
DQ2224512Trinucleotide(TCT)515384..398509  bpPrimer
AB7134391Dinucleotide(CA)1326192..217358  bpPrimer
AB7134392Dinucleotide(CA)2448220..267358  bpPrimer
DQ2224461Dinucleotide(GT)1938164..201231  bpPrimer
DQ2224481Dinucleotide(CA)387669..144309  bpPrimer
DQ2224501Dinucleotide(TG)3060135..194213  bpPrimer
AB7134371Dinucleotide(TG)1530674..703890  bpPrimer
DQ2224521Dinucleotide(GA)61275..86194  bpPrimer
DQ2224522Dinucleotide(GA)265293..144194  bpPrimer
DQ2224491Dinucleotide(GT)2040323..362479  bpPrimer
AB7134311Dinucleotide(CA)285658..113472  bpPrimer
AB7134312Dinucleotide(GT)1428225..252472  bpPrimer
DQ2224411Dinucleotide(CA)142857..84221  bpPrimer
DQ2224412Dinucleotide(AC)81686..101221  bpPrimer
DQ2224451Trinucleotide(GAA)515114..128512  bpPrimer
DQ2224452Dinucleotide(AC)2040378..417512  bpPrimer
MG2149321Tetranucleotide(ATCT)1456256..311435  bpPrimer
MG2149211Dinucleotide(TA)816106..121421  bpPrimer
MG2149501Hexanucleotide(CCAGCA)636301..336427  bpPrimer
MG2149121Dinucleotide(GT)81685..100400  bpPrimer
MG2149291Trinucleotide(CAG)1030268..297424  bpPrimer
MF4186111Mononucleotide(A)1515121..135653  bpPrimer
MF4186112Dinucleotide(AC)1530235..264653  bpPrimer
MG2149491Pentanucleotide(CACAA)1155301..355408  bpPrimer
MF4186261Trinucleotide(GAG)721309..329359  bpPrimer
MG2149361Tetranucleotide(AAAC)93672..107407  bpPrimer
MH7276051Dinucleotide(GT)132694..119125  bpPrimer
MF4186371Dinucleotide(GT)142841..68336  bpPrimer
MG2149391Tetranucleotide(GATA)2080301..380429  bpPrimer
MG2149161Dinucleotide(AC)1632171..202483  bpPrimer
MG2149461Pentanucleotide(TTTCT)94567..111411  bpPrimer
MG2149141Dinucleotide(TC)816105..120420  bpPrimer
MH7275971Dinucleotide(AC)142849..76125  bpPrimer
MG2149331Tetranucleotide(TCTG)936301..336386  bpPrimer
MG2149091Dinucleotide(GT)1836141..176426  bpPrimer
MF4186151Dinucleotide(CA)326440..103407  bpPrimer
MG2149411Pentanucleotide(ATGAC)525121..145428  bpPrimer
MG2149401Pentanucleotide(GATAT)1365228..292438  bpPrimer
MG2149301Trinucleotide(TTG)721124..144422  bpPrimer
MG2149381Tetranucleotide(TCTT)1560156..215438  bpPrimer
MH7275961Trinucleotide(TTA)51555..69125  bpPrimer
MF4186101Mononucleotide(T)1717308..324759  bpPrimer
MG2149351Tetranucleotide(AAAC)624178..201475  bpPrimer
MH7276011Dinucleotide(CA)102085..104125  bpPrimer
MF4186391Dinucleotide(TC)1632444..475484  bpPrimer
MG2149281Trinucleotide(CAT)103062..91391  bpPrimer
MG2149521Hexanucleotide(GTACTT)530301..330380  bpPrimer
MG2149481Pentanucleotide(AACTA)1470276..345463  bpPrimer
MG2149371Tetranucleotide(AGAT)2288291..378425  bpPrimer
MG2149441Pentanucleotide(CTTTT)94550..94394  bpPrimer
MG2149151Dinucleotide(TC)2754158..211470  bpPrimer
MG2149471Pentanucleotide(ATTCT)1050269..318462  bpPrimer
MH7275941Dinucleotide(CA)153039..68177  bpPrimer
MH7275942Dinucleotide(AC)132670..95177  bpPrimer
MH7276001Dinucleotide(AC)112235..56125  bpPrimer
MG2149101Dinucleotide(CA)122498..121421  bpPrimer
MF4186201Mononucleotide(C)1212199..210499  bpPrimer
MF4186202Dinucleotide(CA)1734415..448499  bpPrimer
MF4186203Dinucleotide(CA)714451..464499  bpPrimer
MG2149171Dinucleotide(TG)816301..316447  bpPrimer
MG2149181Dinucleotide(AC)1326155..180431  bpPrimer
MG2149551Hexanucleotide(TCAGAA)53082..111411  bpPrimer
MG2149271Trinucleotide(TCT)2163104..166466  bpPrimer
MG2149191Dinucleotide(AC)918121..138438  bpPrimer
MG2149261Trinucleotide(CTC)824141..164417  bpPrimer
MF4186361Dinucleotide(GT)1428248..275728  bpPrimer
MF4186131Trinucleotide(CAA)618341..358596  bpPrimer
MF4186381Dinucleotide(GT)2652119..170527  bpPrimer
MF4186382Dinucleotide(TG)612178..189527  bpPrimer
MF4186383Dinucleotide(TG)1020295..314527  bpPrimer
MF4186384Dinucleotide(GT)1428397..424527  bpPrimer
MG2149251Dinucleotide(AC)1122301..322410  bpPrimer
MH7276021Dinucleotide(AC)81671..86125  bpPrimer
MF4186161Dinucleotide(AC)714544..557662  bpPrimer
MF4186141Dinucleotide(TG)224437..80487  bpPrimer
MF4186142Dinucleotide(GA)61290..101487  bpPrimer
MF4186143Mononucleotide(A)1818352..369487  bpPrimer
MF4186291Dinucleotide(GT)1632354..385523  bpPrimer
MF4186292Dinucleotide(GT)1734388..421523  bpPrimer
MG2149201Dinucleotide(AC)1122153..174435  bpPrimer
MG2149311Trinucleotide(ATA)721131..151429  bpPrimer
MG2149341Tetranucleotide(CAAA)624301..324429  bpPrimer
MF4186081Mononucleotide(A)1010155..164349  bpPrimer
MF4186082Dinucleotide(CA)612216..227349  bpPrimer
MG2149451Pentanucleotide(TCCTT)1155301..355472  bpPrimer
MH7276041Dinucleotide(CA)183671..106125  bpPrimer
MG2149531Hexanucleotide(TAGGTT)53099..128403  bpPrimer
MH7275991Dinucleotide(AC)81666..81125  bpPrimer
MG2149511Hexanucleotide(TACATA)954301..354477  bpPrimer
MH7276031Trinucleotide(CAG)92762..88125  bpPrimer
MG2149131Dinucleotide(TG)1632152..183426  bpPrimer
MG2149241Dinucleotide(GT)1020301..320420  bpPrimer
MG2149221Dinucleotide(GT)122487..110410  bpPrimer
MF4186121Tetranucleotide(CTGT)520237..256584  bpPrimer
MF4186411Dinucleotide(GT)18364..39546  bpPrimer
MF4186311Dinucleotide(AC)142836..63355  bpPrimer
MF4186312Dinucleotide(CA)714181..194355  bpPrimer
MG2149111Dinucleotide(AC)1326103..128428  bpPrimer
MG2149421Pentanucleotide(CTCTT)136561..125425  bpPrimer
MG2149231Dinucleotide(CA)816155..170470  bpPrimer
MF4186341Dinucleotide(CT)1632154..185298  bpPrimer
MG2149431Pentanucleotide(AAAGG)525239..263423  bpPrimer
MG2149541Hexanucleotide(TGTGCT)137868..145398  bpPrimer
 
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