Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Acanthopagrus berda [68]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AM9922291Mononucleotide(C)1414749..7621012  bpPrimer
AM9922521Mononucleotide(C)1212752..7631013  bpPrimer
AM9922271Mononucleotide(C)1212749..7601010  bpPrimer
AM9922211Mononucleotide(C)1313749..7611011  bpPrimer
AM9922451Mononucleotide(C)1313749..7611011  bpPrimer
AM1800831Dinucleotide(TG)122478..101142  bpPrimer
AM9922311Mononucleotide(C)1313751..7631013  bpPrimer
AM9922091Mononucleotide(C)1515748..7621012  bpPrimer
AM9922461Mononucleotide(C)1313749..7611011  bpPrimer
AM9922281Mononucleotide(C)1414749..7621012  bpPrimer
AM1101401Dinucleotide(GT)81639..54159  bpPrimer
AM1101402Dinucleotide(TG)224476..119159  bpPrimer
AM9922081Mononucleotide(C)1313748..7601010  bpPrimer
AM9922501Mononucleotide(C)1212749..7601010  bpPrimer
AM9922381Mononucleotide(C)1414749..7621012  bpPrimer
AM9922131Mononucleotide(C)1111748..7581008  bpPrimer
AM9922321Mononucleotide(C)1414750..7631013  bpPrimer
AM9922231Mononucleotide(C)1414750..7631013  bpPrimer
AM9922531Mononucleotide(C)1313749..7611011  bpPrimer
AM9922351Mononucleotide(C)1313749..7611011  bpPrimer
AM9922471Mononucleotide(C)1212749..7601010  bpPrimer
AM1800821Dinucleotide(GT)81682..97140  bpPrimer
AM9922241Mononucleotide(C)1313749..7611011  bpPrimer
AM1800871Dinucleotide(TG)183684..119151  bpPrimer
AM9922301Mononucleotide(C)1414750..7631013  bpPrimer
AM9922421Mononucleotide(C)1313749..7611011  bpPrimer
AM1800841Dinucleotide(AC)153074..103157  bpPrimer
AM1800851Dinucleotide(GT)244829..76112  bpPrimer
AM1101381Dinucleotide(GT)153048..77151  bpPrimer
AM1101382Dinucleotide(GT)163280..111151  bpPrimer
AM9922441Mononucleotide(C)1414750..7631013  bpPrimer
AM9922171Mononucleotide(C)1414748..7611011  bpPrimer
AM1101391Dinucleotide(GT)91831..48134  bpPrimer
AM1101392Dinucleotide(GT)255051..100134  bpPrimer
AM9922401Mononucleotide(C)1212749..7601010  bpPrimer
AM9922121Mononucleotide(C)1313748..7601010  bpPrimer
AM9922251Mononucleotide(C)1414748..7611011  bpPrimer
AM9922411Mononucleotide(C)1313749..7611011  bpPrimer
AM9922111Mononucleotide(C)1212748..7591009  bpPrimer
AM9922511Mononucleotide(C)1212749..7601011  bpPrimer
AM9922061Mononucleotide(C)1313748..7601010  bpPrimer
AM9922181Mononucleotide(C)1111749..7591009  bpPrimer
AM9922371Mononucleotide(C)1212749..7601010  bpPrimer
AM9922141Mononucleotide(C)1414748..7611011  bpPrimer
AM9922481Mononucleotide(C)1313749..7611011  bpPrimer
AM9922191Mononucleotide(C)1313749..7611011  bpPrimer
AM9922491Mononucleotide(C)1212750..7611011  bpPrimer
AM9922261Mononucleotide(T)1010541..5501014  bpPrimer
AM9922262Mononucleotide(C)1414751..7641014  bpPrimer
AM9922341Mononucleotide(C)1414747..7601010  bpPrimer
AM9922431Mononucleotide(C)1414749..7621012  bpPrimer
AM9922151Mononucleotide(C)1515748..7621012  bpPrimer
AM9922161Mononucleotide(C)1313749..7611011  bpPrimer
AM9922391Mononucleotide(C)1212749..7601010  bpPrimer
AM9922221Mononucleotide(C)1212748..7591009  bpPrimer
AM9922541Mononucleotide(C)1313748..7601010  bpPrimer
AM9922201Mononucleotide(C)1212749..7601009  bpPrimer
AM9922051Mononucleotide(C)1414748..7611011  bpPrimer
AM9922331Mononucleotide(C)1414749..7621010  bpPrimer
AM1800861Dinucleotide(GT)265252..103161  bpPrimer
AM9922101Mononucleotide(C)1313747..7591009  bpPrimer
AM9922361Mononucleotide(C)1414750..7631013  bpPrimer
AM1800861Dinucleotide(GT)265252..103161  bpPrimer
AM1800821Dinucleotide(GT)81682..97140  bpPrimer
AM1101401Dinucleotide(GT)81639..54159  bpPrimer
AM1101402Dinucleotide(TG)224476..119159  bpPrimer
AM1101391Dinucleotide(GT)91831..48134  bpPrimer
AM1101392Dinucleotide(GT)255051..100134  bpPrimer
AM1800831Dinucleotide(TG)122478..101142  bpPrimer
AM1101381Dinucleotide(GT)153048..77151  bpPrimer
AM1101382Dinucleotide(GT)163280..111151  bpPrimer
AM1800871Dinucleotide(TG)183684..119151  bpPrimer
AM1800851Dinucleotide(GT)244829..76112  bpPrimer
AM1800841Dinucleotide(AC)153074..103157  bpPrimer
 
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