Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Channa marulius [47]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HQ3384061Dinucleotide(GA)9188..2573  bpPrimer
HQ3384071Dinucleotide(CA)17349..4272  bpPrimer
KJ4543951Dinucleotide(GT)816262..277419  bpPrimer
KJ4543952Mononucleotide(T)1313282..294419  bpPrimer
KJ4543851Dinucleotide(CA)612112..123420  bpPrimer
KJ4543741Dinucleotide(CA)91887..104422  bpPrimer
KJ4543742Dinucleotide(AC)714112..125422  bpPrimer
KJ4543743Dinucleotide(AC)2652128..179422  bpPrimer
KJ4543744Dinucleotide(CA)714181..194422  bpPrimer
KJ4543745Dinucleotide(CA)1836207..242422  bpPrimer
KJ4543746Dinucleotide(CA)612245..256422  bpPrimer
KJ4543747Dinucleotide(CA)612259..270422  bpPrimer
KJ4543748Dinucleotide(CA)612291..302422  bpPrimer
KJ4543681Dinucleotide(AC)714495..508523  bpPrimer
KJ4543721Dinucleotide(TC)102051..7070  bpPrimer
KJ4543971Dinucleotide(AC)142827..54367  bpPrimer
KJ4543771Composite(CA)9(CT)93674..109109  bpPrimer
KJ4543811Dinucleotide(AC)112243..64377  bpPrimer
KJ4543981Dinucleotide(TG)1224172..195314  bpPrimer
KJ4544061Composite(TC)10(AC)63262..93390  bpPrimer
KJ4544031Dinucleotide(AG)122419..42162  bpPrimer
KJ4543621Mononucleotide(A)1010199..208616  bpPrimer
KJ4543622Dinucleotide(CT)612368..379616  bpPrimer
KJ4543623Dinucleotide(CA)714409..422616  bpPrimer
KJ4543701Dinucleotide(GT)1326108..133270  bpPrimer
KJ4543991Dinucleotide(CA)102047..66281  bpPrimer
KJ4543631Dinucleotide(GT)816108..123415  bpPrimer
KJ4543891Dinucleotide(AC)1122128..149328  bpPrimer
KJ4543901Dinucleotide(AG)132647..72312  bpPrimer
KJ4544011Dinucleotide(CA)612124..135434  bpPrimer
KJ4543881Dinucleotide(AG)61288..99522  bpPrimer
KJ4543831Dinucleotide(GT)81660..75263  bpPrimer
KJ4543861Dinucleotide(AC)612193..204469  bpPrimer
KJ4543862Dinucleotide(CA)918206..223469  bpPrimer
KJ4543863Dinucleotide(CA)918238..255469  bpPrimer
KJ4543751Dinucleotide(AC)12241..24293  bpPrimer
KJ4543761Composite(GA)14(GT)6401..40457  bpPrimer
KJ4543651Dinucleotide(TG)122421..44379  bpPrimer
KJ4543641Dinucleotide(CA)142873..100530  bpPrimer
KJ4543821Dinucleotide(AC)1122272..293322  bpPrimer
KJ4543791Dinucleotide(CA)265249..100422  bpPrimer
KJ4543671Dinucleotide(GT)1326104..129193  bpPrimer
KJ4543781Dinucleotide(CT)714118..131158  bpPrimer
KJ4543782Dinucleotide(CT)1224134..157158  bpPrimer
KJ4543801Dinucleotide(AC)1020259..278378  bpPrimer
KJ4543802Dinucleotide(AC)714281..294378  bpPrimer
KJ4543803Dinucleotide(CA)2448302..349378  bpPrimer
KJ4543804Dinucleotide(CT)1020358..377378  bpPrimer
KJ4543841Dinucleotide(AC)2142237..278330  bpPrimer
KJ4543911Dinucleotide(CA)612228..239589  bpPrimer
KJ4543871Dinucleotide(TG)1530444..473543  bpPrimer
KJ4543921Dinucleotide(AC)816146..161233  bpPrimer
KJ4544021Dinucleotide(GT)71451..64225  bpPrimer
KJ4543711Dinucleotide(AC)61224..35176  bpPrimer
KJ4543712Dinucleotide(CT)1326125..150176  bpPrimer
KJ4543713Dinucleotide(CT)816153..168176  bpPrimer
KJ4543691Dinucleotide(AC)714305..318597  bpPrimer
KJ4543961Dinucleotide(AC)612165..176260  bpPrimer
KJ4544041Dinucleotide(AG)61231..421006  bpPrimer
KJ4543931Dinucleotide(AG)612180..191454  bpPrimer
KJ4543661Dinucleotide(AC)714486..499644  bpPrimer
KJ4543941Dinucleotide(TG)612210..221401  bpPrimer
KJ4544051Dinucleotide(CA)91893..110385  bpPrimer
KJ4544052Dinucleotide(AC)816211..226385  bpPrimer
 
Home  CABin home  Support &Feedback
Copyright© NBFGR (ICAR), All Rights Reserved.
Designed and developed by NABG team, NBFGR, Lucknow