Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pampus argenteus [57]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JX8722311Dinucleotide(AC)295848..105309  bpPrimer
JX8722312Composite(TG)7(T)1125129..153309  bpPrimer
JX8722313Mononucleotide(A)1212293..304309  bpPrimer
DQ3936681Dinucleotide(AC)255058..107599  bpPrimer
JQ3073981Dinucleotide(TG)91847..64180  bpPrimer
JQ3073982Dinucleotide(TG)61275..86180  bpPrimer
JQ3073983Dinucleotide(GT)612100..111180  bpPrimer
JQ3073931Dinucleotide(GT)367260..131271  bpPrimer
DQ3936701Dinucleotide(GA)918171..188449  bpPrimer
DQ3936702Dinucleotide(AG)1836196..231449  bpPrimer
JX8722351Dinucleotide(TG)1326175..200257  bpPrimer
JQ3073901Dinucleotide(GT)122489..112204  bpPrimer
JQ3073902Dinucleotide(GT)1020115..134204  bpPrimer
JQ3073941Dinucleotide(CT)1632129..160253  bpPrimer
JQ3073942Dinucleotide(TC)612178..189253  bpPrimer
JQ3073961Tetranucleotide(ACAG)62464..87289  bpPrimer
JQ3073962Dinucleotide(CA)142891..118289  bpPrimer
JX8722341Dinucleotide(GT)1020139..158311  bpPrimer
JX8722342Dinucleotide(TG)816184..199311  bpPrimer
JX8722343Mononucleotide(A)1111299..309311  bpPrimer
JX8722371Composite(GT)19(TG)136479..142201  bpPrimer
JX8722372Dinucleotide(AG)612145..156201  bpPrimer
JX8722373Mononucleotide(A)1212190..201201  bpPrimer
JQ3074001Dinucleotide(AC)153067..96215  bpPrimer
DQ3936661Dinucleotide(AC)1020265..284551  bpPrimer
DQ3936691Dinucleotide(AC)918344..361488  bpPrimer
JQ3073991Dinucleotide(CA)1326115..140255  bpPrimer
JQ3073992Dinucleotide(CA)1938143..180255  bpPrimer
JQ3073911Dinucleotide(GT)367260..131271  bpPrimer
DQ3936711Dinucleotide(TG)1938119..156419  bpPrimer
JX8722361Dinucleotide(GT)244862..109188  bpPrimer
DQ3936731Dinucleotide(AG)1326130..155390  bpPrimer
DQ3936732Dinucleotide(TG)1836355..390390  bpPrimer
DQ3936721Dinucleotide(AC)1122186..207414  bpPrimer
JQ3073891Dinucleotide(CA)448856..143304  bpPrimer
JX8722321Dinucleotide(GT)71443..56244  bpPrimer
JX8722322Dinucleotide(GT)173463..96244  bpPrimer
DQ3936651Dinucleotide(GT)1938599..636676  bpPrimer
DQ3936631Dinucleotide(AC)71431..44769  bpPrimer
DQ3936632Dinucleotide(CT)612383..394769  bpPrimer
DQ3936633Dinucleotide(CT)918397..414769  bpPrimer
DQ3936634Dinucleotide(TC)612416..427769  bpPrimer
DQ3936635Dinucleotide(CA)1326596..621769  bpPrimer
JQ3073971Tetranucleotide(TGTA)93662..97250  bpPrimer
JQ3073972Tetranucleotide(GTAT)62499..122250  bpPrimer
JQ3073973Dinucleotide(GT)2346129..174250  bpPrimer
JQ3073974Dinucleotide(TG)1020176..195250  bpPrimer
DQ3936671Dinucleotide(CA)1122193..214623  bpPrimer
JQ3073881Dinucleotide(AC)1122197..218306  bpPrimer
JX8722331Dinucleotide(CA)71454..67185  bpPrimer
JX8722332Dinucleotide(AC)132677..102185  bpPrimer
JQ3073921Dinucleotide(AG)255050..99227  bpPrimer
JQ3073922Dinucleotide(GA)612103..114227  bpPrimer
KR0919281Dinucleotide(AC)1326176..201461  bpPrimer
KR0919411Dinucleotide(GT)816209..224415  bpPrimer
KR0919412Dinucleotide(GT)714326..339415  bpPrimer
KR0919161Dinucleotide(CA)61223..34173  bpPrimer
KR0919162Dinucleotide(CA)71437..50173  bpPrimer
KR0919341Dinucleotide(TG)816165..180542  bpPrimer
KR0919342Dinucleotide(TG)918201..218542  bpPrimer
KR0919301Dinucleotide(CA)612182..193382  bpPrimer
KR0919241Dinucleotide(CT)918182..199546  bpPrimer
KR0919321Dinucleotide(GT)612270..281385  bpPrimer
KR0919401Composite(AG)6(AC)1542248..289388  bpPrimer
KR0919311Composite(GT)10(AT)632151..182355  bpPrimer
KR0919331Dinucleotide(AG)714224..237321  bpPrimer
KR0919261Mononucleotide(T)141467..80468  bpPrimer
KR0919262Dinucleotide(CA)816298..313468  bpPrimer
KR0919391Dinucleotide(TG)91893..110410  bpPrimer
KR0919181Dinucleotide(CA)1122301..322449  bpPrimer
KR0919211Dinucleotide(AC)122455..78123  bpPrimer
KR0919351Dinucleotide(CA)816121..136243  bpPrimer
KR0919231Dinucleotide(CA)1020107..126312  bpPrimer
KR0919251Dinucleotide(AC)234629..74137  bpPrimer
KR0919171Dinucleotide(CT)816209..224377  bpPrimer
KR0919172Dinucleotide(TC)816226..241377  bpPrimer
KR0919371Dinucleotide(CA)1020134..153285  bpPrimer
KR0919291Dinucleotide(TG)153031..60126  bpPrimer
KR0919221Composite(CT)6(CA)195021..70111  bpPrimer
KR0919271Dinucleotide(AC)1020186..205397  bpPrimer
KR0919272Dinucleotide(CT)1530296..325397  bpPrimer
 
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