Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Puntius chalakkudiensis [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JN5647131Dinucleotide(AC)71468..81137  bpPrimer
JN5647132Dinucleotide(AC)71484..97137  bpPrimer
JN5647141Dinucleotide(CA)91842..59120  bpPrimer
JN5647142Dinucleotide(CA)81665..80120  bpPrimer
JN5647071Dinucleotide(CA)81674..89164  bpPrimer
JN5647072Dinucleotide(CA)132691..116164  bpPrimer
JN5647091Dinucleotide(CA)173424..57165  bpPrimer
JN5647092Dinucleotide(CA)61260..71165  bpPrimer
JN5647111Trinucleotide(CCT)1030111..140251  bpPrimer
JN5647112Dinucleotide(CA)714145..158251  bpPrimer
JN5647113Dinucleotide(AC)1224176..199251  bpPrimer
JN5647114Dinucleotide(AC)612204..215251  bpPrimer
JN5647061Composite(GT)9(TG)144643..88146  bpPrimer
JN5647121Dinucleotide(AC)142884..111148  bpPrimer
JN5647161Dinucleotide(CA)173441..74170  bpPrimer
JN5647162Dinucleotide(CA)714101..114170  bpPrimer
JN5647101Dinucleotide(AC)112296..117204  bpPrimer
JN5647102Dinucleotide(AC)1122121..142204  bpPrimer
JN5647103Dinucleotide(CA)816146..161204  bpPrimer
JN5647081Dinucleotide(AC)132674..99164  bpPrimer
JN5647082Dinucleotide(AC)1122106..127164  bpPrimer
JN5647151Dinucleotide(AC)81637..52124  bpPrimer
JN5647152Dinucleotide(CA)81655..70124  bpPrimer
 
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