Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Fenneropenaeus indicus [182]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF2976531Dinucleotide(AC)816141..156274  bpPrimer
JF2976561Dinucleotide(TC)1428178..205341  bpPrimer
JF2976551Tetranucleotide(ACAG)624127..150561  bpPrimer
JF2976552Dinucleotide(AT)2346234..279561  bpPrimer
JF7152221Dinucleotide(GA)2856308..363397  bpPrimer
JF7152181Dinucleotide(CT)81644..59135  bpPrimer
JF7152621Mononucleotide(T)1919116..134183  bpPrimer
JF7152161Trinucleotide(CAA)82433..56239  bpPrimer
JF7152162Trinucleotide(CAA)103060..89239  bpPrimer
JF7152211Dinucleotide(CT)1632279..310318  bpPrimer
JF7152381Dinucleotide(GT)61257..68290  bpPrimer
JF7152382Dinucleotide(TA)2448176..223290  bpPrimer
JF7152561Composite(GGTC)7(AGTC)86023..82251  bpPrimer
JF7152562Tetranucleotide(AGTC)72887..114251  bpPrimer
JF7152201Dinucleotide(GT)918114..131147  bpPrimer
JF7152591Composite(TCC)7(CTC)742157..198268  bpPrimer
JF7152471Dinucleotide(TG)3264185..248270  bpPrimer
JF7152641Dinucleotide(AT)71432..45129  bpPrimer
JF7152411Dinucleotide(AC)816135..150252  bpPrimer
JF7152541Trinucleotide(CAT)51569..83332  bpPrimer
JF7152542Composite(ATC)24(AAC)99991..189332  bpPrimer
JF7152543Trinucleotide(ATC)515224..238332  bpPrimer
JF7152544Trinucleotide(CAG)1030270..299332  bpPrimer
JF7152545Trinucleotide(CAT)927306..332332  bpPrimer
JF7152491Dinucleotide(CT)61232..43297  bpPrimer
JF7152492Tetranucleotide(TCTA)145687..142297  bpPrimer
JF7152493Tetranucleotide(AGTC)2496175..270297  bpPrimer
JF7152531Dinucleotide(AT)81692..107215  bpPrimer
JF7152571Tetranucleotide(ACAG)728138..165205  bpPrimer
JF7152261Dinucleotide(TG)153039..68180  bpPrimer
JF7152121Dinucleotide(AT)9184..21329  bpPrimer
JF7152122Trinucleotide(TGG)824100..123329  bpPrimer
JF7152651Trinucleotide(TAA)154583..127245  bpPrimer
JF7152661Dinucleotide(AG)112246..67248  bpPrimer
JF7152662Tetranucleotide(TGAC)2080116..195248  bpPrimer
JF7152551Tetranucleotide(TACA)62455..78193  bpPrimer
JN9771391Tetranucleotide(GACT)52099..118335  bpPrimer
JF7152191Dinucleotide(CA)173489..122341  bpPrimer
JF7152192Dinucleotide(CA)714193..206341  bpPrimer
JF7152193Dinucleotide(AC)714255..268341  bpPrimer
JF7152341Dinucleotide(TA)71499..112232  bpPrimer
JF7152511Dinucleotide(AT)2040101..140304  bpPrimer
JF7152512Dinucleotide(AT)1530143..172304  bpPrimer
JF7152611Dinucleotide(TC)816193..208242  bpPrimer
JF7152331Dinucleotide(TG)1530110..139283  bpPrimer
JF7152431Trinucleotide(TTA)2163146..208347  bpPrimer
JF7152631Dinucleotide(CA)132684..109236  bpPrimer
JF7152632Dinucleotide(AC)714133..146236  bpPrimer
JF7152291Dinucleotide(TC)3774234..307347  bpPrimer
JF7152251Dinucleotide(GT)3162257..318448  bpPrimer
JF7152252Dinucleotide(GA)3060325..384448  bpPrimer
JF7152241Dinucleotide(AG)91878..95183  bpPrimer
JF7152242Dinucleotide(AG)142898..125183  bpPrimer
JF7152271Dinucleotide(TA)714107..120273  bpPrimer
JF7152441Dinucleotide(TC)1326153..178268  bpPrimer
JF7152442Dinucleotide(CT)3468180..247268  bpPrimer
JF7152151Dinucleotide(TG)1428180..207282  bpPrimer
JF7152501Dinucleotide(AG)224439..82207  bpPrimer
JF7152581Trinucleotide(GAT)4112385..207322  bpPrimer
JF7152521Dinucleotide(CA)418271..152319  bpPrimer
JF7152281Dinucleotide(CT)918140..157201  bpPrimer
JF7152171Tetranucleotide(CTCA)936132..167210  bpPrimer
JF7152231Dinucleotide(TG)714215..228355  bpPrimer
JF7152301Dinucleotide(GT)61275..86171  bpPrimer
JF7152321Dinucleotide(CT)71435..48214  bpPrimer
JF7152361Tetranucleotide(TCTG)17689..76105  bpPrimer
JF7152351Dinucleotide(AC)163219..50124  bpPrimer
JF7152352Dinucleotide(CA)71452..65124  bpPrimer
JF7152353Dinucleotide(CA)204068..107124  bpPrimer
JF7152461Dinucleotide(GT)255036..85191  bpPrimer
JF7152481Dinucleotide(AG)285672..127171  bpPrimer
JF7152451Dinucleotide(TG)132641..66121  bpPrimer
JF7152601Trinucleotide(TTC)1030146..175199  bpPrimer
JF7152371Trinucleotide(TTA)113341..73148  bpPrimer
JF7152372Dinucleotide(AT)61298..109148  bpPrimer
JF7152311Trinucleotide(ATA)9273..29201  bpPrimer
JQ8663091Tetranucleotide(TGGA)520282..301333  bpPrimer
JQ8663131Tetranucleotide(AGAT)83229..60132  bpPrimer
JQ8663701Dinucleotide(TG)71469..82377  bpPrimer
JQ8663702Composite(TG)6(TATC)63685..120377  bpPrimer
JQ8663711Tetranucleotide(TAGA)83236..6770  bpPrimer
JQ8663751Tetranucleotide(TGTC)624196..219300  bpPrimer
JQ8663752Dinucleotide(CT)1530249..278300  bpPrimer
JQ8663561Dinucleotide(GA)612209..220295  bpPrimer
JQ8663501Tetranucleotide(CTAT)936245..280281  bpPrimer
JQ8663871Tetranucleotide(TCTA)1248102..149385  bpPrimer
JQ8663261Tetranucleotide(ATAG)1456122..177184  bpPrimer
JQ8663181Tetranucleotide(CTGT)624232..255257  bpPrimer
JN1854271Dinucleotide(CA)1224156..179261  bpPrimer
JQ8663051Trinucleotide(AAT)51588..102339  bpPrimer
JQ8663052Tetranucleotide(AAAG)624181..204339  bpPrimer
JQ8663111Tetranucleotide(TTTC)520185..204495  bpPrimer
JQ8663112Trinucleotide(TTC)1442234..275495  bpPrimer
JQ8663761Tetranucleotide(CTAT)936275..310313  bpPrimer
JQ9002301Tetranucleotide(CATA)624231..254665  bpPrimer
JQ8663361Tetranucleotide(CTAT)936171..206691  bpPrimer
JQ8663241Tetranucleotide(ATAG)1248125..172195  bpPrimer
JQ8663941c*(GATA)5(AG)11*4133..73271  bpPrimer
JQ8663942Mononucleotide(A)131377..89271  bpPrimer
JQ8663631Tetranucleotide(TGTC)520291..310418  bpPrimer
JQ8663632Tetranucleotide(TCTG)520327..346418  bpPrimer
JQ8663633Composite(TCTG)7(TC)640354..393418  bpPrimer
JQ8663001Tetranucleotide(ATAG)1872128..199356  bpPrimer
JQ8663381Dinucleotide(AG)612179..190543  bpPrimer
JQ8663382Dinucleotide(CT)1224362..385543  bpPrimer
JQ8663171Tetranucleotide(AGAT)52098..117122  bpPrimer
JQ8663811Tetranucleotide(TGTC)520260..279356  bpPrimer
JQ8663812Tetranucleotide(TCTG)624296..319356  bpPrimer
JQ8663813Tetranucleotide(TCTG)728322..349356  bpPrimer
JQ8663541Tetranucleotide(GATA)83222..53179  bpPrimer
JQ8663661Tetranucleotide(GATA)8324..35242  bpPrimer
JQ8663662Composite(AGAT)5(AG)93839..76242  bpPrimer
JQ8663841Dinucleotide(GA)1428242..269430  bpPrimer
JQ8663842Composite(AGAT)10(AG)958281..338430  bpPrimer
JQ8663771Tetranucleotide(ATAG)104012..51214  bpPrimer
JQ8663121Mononucleotide(A)111138..48405  bpPrimer
JQ8663122Mononucleotide(A)101095..104405  bpPrimer
JQ8663511Dinucleotide(GA)714316..329517  bpPrimer
JQ8663512Dinucleotide(GA)612348..359517  bpPrimer
JQ8663513Tetranucleotide(ATAG)520395..414517  bpPrimer
JQ8663521Tetranucleotide(GATA)83243..74208  bpPrimer
JN1854191Dinucleotide(CA)336651..116251  bpPrimer
JQ8663231Tetranucleotide(ATAG)520261..280449  bpPrimer
JQ8663611Dinucleotide(GT)1122290..311400  bpPrimer
JQ8663161Tetranucleotide(CATA)832178..209396  bpPrimer
JQ8663041Tetranucleotide(ATCT)520187..206225  bpPrimer
JQ8663791Tetranucleotide(TCTA)728153..180182  bpPrimer
JN7879611Composite(TA)8(CA)1750101..150269  bpPrimer
JQ8663401Tetranucleotide(TCTG)52046..65662  bpPrimer
JQ8663721Tetranucleotide(TCTA)1040159..198254  bpPrimer
JQ8663781Dinucleotide(TC)1020658..677729  bpPrimer
JQ8663782Trinucleotide(TTC)515702..716729  bpPrimer
JQ8663671Tetranucleotide(ATCT)520127..146188  bpPrimer
JQ8663672Trinucleotide(TCT)515172..186188  bpPrimer
JN1854201Dinucleotide(GA)2958192..249322  bpPrimer
JQ8663151Tetranucleotide(GATA)62417..40347  bpPrimer
JQ8663152Dinucleotide(AG)714155..168347  bpPrimer
JQ8663731Dinucleotide(TC)1122168..189217  bpPrimer
JQ8663732Dinucleotide(TG)714204..217217  bpPrimer
JQ8663081Dinucleotide(CT)612384..395480  bpPrimer
JN7879571Dinucleotide(AT)61252..63249  bpPrimer
JQ8663551Dinucleotide(CT)612218..229500  bpPrimer
JQ8663552Tetranucleotide(CAGG)520344..363500  bpPrimer
JQ8663311Mononucleotide(T)101087..96195  bpPrimer
JQ8663312Tetranucleotide(ATAG)1768123..190195  bpPrimer
JQ8663901Tetranucleotide(CTAT)520137..156757  bpPrimer
JN7879581Dinucleotide(TG)61260..71198  bpPrimer
JQ8663411Dinucleotide(TG)714329..342575  bpPrimer
JQ9002291c*(AAGA)12(AAG)19*101228..328574  bpPrimer
JQ9002292Mononucleotide(T)1212373..384574  bpPrimer
JN7879591Pentanucleotide(CCCCG)52594..118161  bpPrimer
JN1854261Dinucleotide(TG)816205..220390  bpPrimer
JN1854262Dinucleotide(TG)2754232..285390  bpPrimer
JN1854263Dinucleotide(TG)2448301..348390  bpPrimer
JQ8663821Tetranucleotide(GATA)62494..117117  bpPrimer
JN1854321Tetranucleotide(TAAA)62482..105215  bpPrimer
JQ8663831Tetranucleotide(TGTC)520106..125481  bpPrimer
JQ8663801c*(AG)6(AGAT)9*46272..317461  bpPrimer
JN7879601Dinucleotide(AC)4080109..188210  bpPrimer
JQ8663331Trinucleotide(AGA)1339198..236476  bpPrimer
JQ8662991Tetranucleotide(GATA)728100..127127  bpPrimer
JQ8663341Dinucleotide(TC)1224120..143439  bpPrimer
JQ8663342Tetranucleotide(ATCT)624207..230439  bpPrimer
JQ8663391Tetranucleotide(GATA)624178..201456  bpPrimer
JQ8663392Tetranucleotide(GATA)1144205..248456  bpPrimer
JN1854301Dinucleotide(AC)81649..64212  bpPrimer
JN1854302Dinucleotide(CA)244876..123212  bpPrimer
JN1854281Trinucleotide(TAT)618215..232277  bpPrimer
JN1854221Dinucleotide(CA)183677..112339  bpPrimer
JN1854222Dinucleotide(TC)714133..146339  bpPrimer
JQ8663281Composite(GATA)17(TATG)58819..106360  bpPrimer
JQ8663861c*(TC)8(TCTA)5*34458..491572  bpPrimer
JQ8663862Trinucleotide(GTA)515527..541572  bpPrimer
JQ8663451Tetranucleotide(GATA)83233..64310  bpPrimer
JQ8663571Tetranucleotide(TCTA)83239..7072  bpPrimer
JQ8663481Tetranucleotide(ATCT)1040286..325328  bpPrimer
JQ8663071Tetranucleotide(TATC)832193..224290  bpPrimer
JQ8663271Trinucleotide(GAT)61838..55372  bpPrimer
JQ8663272Tetranucleotide(AGAT)62472..95372  bpPrimer
JQ8663273Tetranucleotide(TATG)52097..116372  bpPrimer
JQ8663581Tetranucleotide(ATCT)1040288..327330  bpPrimer
JQ8663431Tetranucleotide(TATC)1040183..222445  bpPrimer
JQ8663432Trinucleotide(CTC)515261..275445  bpPrimer
JQ8663433Trinucleotide(TCA)618280..297445  bpPrimer
JQ8663911Tetranucleotide(TATC)520129..148308  bpPrimer
JQ8663912Tetranucleotide(TCTA)936182..217308  bpPrimer
JQ8663471Dinucleotide(AC)918117..134440  bpPrimer
JQ8663472Dinucleotide(GT)1530149..178440  bpPrimer
JQ8663473Trinucleotide(TAT)515197..211440  bpPrimer
JQ8663201Tetranucleotide(TCTA)208092..171794  bpPrimer
JN7879621Trinucleotide(GCA)1236184..219235  bpPrimer
JQ8663221Dinucleotide(TC)612316..327356  bpPrimer
JQ8663222Tetranucleotide(CTTT)520337..356356  bpPrimer
JQ8663931Tetranucleotide(GATA)93628..63287  bpPrimer
JQ8663741Composite(AGAT)9(AG)1566172..237418  bpPrimer
JQ8663742Dinucleotide(AG)816240..255418  bpPrimer
JQ8663371Dinucleotide(CT)91880..97591  bpPrimer
JQ8663372Tetranucleotide(TCTA)624117..140591  bpPrimer
JQ8663881Tetranucleotide(GATA)624180..203540  bpPrimer
JQ8663882Mononucleotide(A)2828217..244540  bpPrimer
JN1854171Trinucleotide(TGA)618156..173381  bpPrimer
JN1854172Tetranucleotide(TTTC)520255..274381  bpPrimer
JN1854251Dinucleotide(CA)3978176..253293  bpPrimer
JQ8663891Tetranucleotide(GATA)83245..76961  bpPrimer
JX0091701Dinucleotide(AG)816170..185442  bpPrimer
JX0091702Tetranucleotide(AGAC)520232..251442  bpPrimer
JN1854241Composite(AC)24(GT)660136..195256  bpPrimer
JN1854242Dinucleotide(AC)918231..248256  bpPrimer
JQ8663191Tetranucleotide(TCTA)52094..113738  bpPrimer
JQ8663021Tetranucleotide(CTAT)624225..248843  bpPrimer
JQ8663101Tetranucleotide(CTAT)52041..60247  bpPrimer
JQ8663011Mononucleotide(T)1010315..324369  bpPrimer
JQ8663291Tetranucleotide(ATAG)520450..469656  bpPrimer
JN1854291Dinucleotide(TC)234691..136137  bpPrimer
JN1854231Dinucleotide(GT)3774172..245343  bpPrimer
JQ8663601Tetranucleotide(GATA)728141..168168  bpPrimer
JQ8663531Tetranucleotide(TATC)832207..238381  bpPrimer
JQ8663532Dinucleotide(TG)2958323..380381  bpPrimer
JQ8663651Tetranucleotide(AGAT)8321..32127  bpPrimer
JQ8663652Tetranucleotide(ACAG)52092..111127  bpPrimer
JQ8663591Tetranucleotide(TCTA)83281..112116  bpPrimer
JN1854181Dinucleotide(GT)408067..146256  bpPrimer
JN1854311Mononucleotide(T)2323125..147199  bpPrimer
JQ8663441c*(GATA)8(AG)15*617..67132  bpPrimer
JN1854211Dinucleotide(TC)3264173..236318  bpPrimer
JQ8663491Dinucleotide(AG)612105..116230  bpPrimer
JQ8663492Tetranucleotide(GACA)520123..142230  bpPrimer
JQ8663301Mononucleotide(A)1010245..254752  bpPrimer
JQ8663302Mononucleotide(A)1010640..649752  bpPrimer
JQ8663851Dinucleotide(TG)714114..127130  bpPrimer
JQ8663921Tetranucleotide(AGAT)62443..6689  bpPrimer
JQ8663031Dinucleotide(GA)612213..224310  bpPrimer
JQ8663032Tetranucleotide(ATAG)936226..261310  bpPrimer
JQ8663033Dinucleotide(GT)1326285..310310  bpPrimer
JQ8663691c*(TC)8(TCTA)5*34430..463475  bpPrimer
JQ8663681Tetranucleotide(ATCT)520117..136185  bpPrimer
JQ8663682Tetranucleotide(CTAT)1040143..182185  bpPrimer
JQ8663641c*(GATA)10(AG)6*5130..80387  bpPrimer
 
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