Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Garra gotyla [62]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF2686641Dinucleotide(GT)1428106..133256  bpPrimer
HQ2884981Dinucleotide(TG)1734330..363477  bpPrimer
HQ2885111Dinucleotide(CT)714168..181534  bpPrimer
HQ2885112Dinucleotide(CA)1428208..235534  bpPrimer
HQ2885061Dinucleotide(AT)61242..53302  bpPrimer
HQ2885062Mononucleotide(A)1111216..226302  bpPrimer
HQ2885063Dinucleotide(AC)1632249..280302  bpPrimer
HQ2885101Dinucleotide(AC)1428171..198377  bpPrimer
HQ2884851Dinucleotide(GT)612391..402515  bpPrimer
HQ2884852Dinucleotide(TG)612410..421515  bpPrimer
JF2686621Dinucleotide(GT)1326178..203790  bpPrimer
JF2686571Mononucleotide(T)1818209..226871  bpPrimer
HQ2885071Dinucleotide(CA)112243..64204  bpPrimer
HQ2885041Dinucleotide(CA)61291..102195  bpPrimer
HQ2885042Composite(AC)16(AT)1460104..163195  bpPrimer
HQ2885021Dinucleotide(TA)816130..145473  bpPrimer
JF2686611Dinucleotide(GT)244890..137700  bpPrimer
HQ2885051Dinucleotide(TG)1428151..178178  bpPrimer
HQ2885141Dinucleotide(CA)61292..103196  bpPrimer
HQ2885142Composite(AC)16(AT)1460105..164196  bpPrimer
HQ2885001Dinucleotide(GT)81656..71330  bpPrimer
HQ2885002Dinucleotide(GT)91880..97330  bpPrimer
HQ2885003Dinucleotide(GT)1122102..123330  bpPrimer
HQ2885111Dinucleotide(CT)714168..181534  bpPrimer
HQ2885112Dinucleotide(CA)1428208..235534  bpPrimer
HQ2885021Dinucleotide(TA)816130..145473  bpPrimer
HQ2885061Dinucleotide(AT)61242..53302  bpPrimer
HQ2885062Mononucleotide(A)1111216..226302  bpPrimer
HQ2885063Dinucleotide(AC)1632249..280302  bpPrimer
 
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