Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chitala chitala [31]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ7866501Dinucleotide(TG)816189..204333  bpPrimer
DQ7866502Dinucleotide(GT)714206..219333  bpPrimer
DQ7866491Dinucleotide(GT)714150..163415  bpPrimer
DQ7866492Dinucleotide(TG)816167..182415  bpPrimer
DQ7866493Dinucleotide(TG)1530187..216415  bpPrimer
DQ7866494Dinucleotide(TG)1836219..254415  bpPrimer
DQ5253981Dinucleotide(GA)612101..112300  bpPrimer
DQ5253982Dinucleotide(GA)1224156..179300  bpPrimer
DQ5253941Dinucleotide(TG)2244147..190300  bpPrimer
DQ5253891Composite(AG)20(TG)9(AG)772111..182350  bpPrimer
DQ5253951Dinucleotide(TC)153045..74300  bpPrimer
DQ5253971Dinucleotide(CA)1122252..273340  bpPrimer
DQ7866371Tetranucleotide(AGAC)1248137..184209  bpPrimer
DQ7866341Dinucleotide(CA)91837..54368  bpPrimer
DQ7866342Dinucleotide(CA)1224132..155368  bpPrimer
DQ5253901Dinucleotide(GA)1938165..202400  bpPrimer
DQ5253902Dinucleotide(TG)918206..223400  bpPrimer
DQ7866461Dinucleotide(GT)61225..36231  bpPrimer
DQ7866462Composite(GC)7(GT)830113..142231  bpPrimer
DQ7866463Dinucleotide(AG)816144..159231  bpPrimer
DQ7866464Dinucleotide(GA)918179..196231  bpPrimer
DQ5253961Tetranucleotide(AGAC)1248130..177214  bpPrimer
DQ7866351Composite(TC)7(AC)113685..120212  bpPrimer
DQ7866441Tetranucleotide(AGAC)1144165..208240  bpPrimer
DQ5253911Dinucleotide(AG)306071..130240  bpPrimer
DQ7866411Tetranucleotide(ACAG)520243..262370  bpPrimer
DQ7866412Tetranucleotide(CAGA)520288..307370  bpPrimer
DQ4962261Dinucleotide(GA)612101..112287  bpPrimer
DQ4962262Dinucleotide(GA)1224156..179287  bpPrimer
DQ7866401Tetranucleotide(AGAC)1144136..179220  bpPrimer
DQ7866521Dinucleotide(CA)714130..143181  bpPrimer
DQ7866451Dinucleotide(GA)1020223..242489  bpPrimer
DQ7866452Dinucleotide(GA)714367..380489  bpPrimer
DQ5253921Dinucleotide(CA)132663..88300  bpPrimer
DQ5253931Composite(TC)12(AC)1452135..186289  bpPrimer
DQ7866361Trinucleotide(CTG)51550..64172  bpPrimer
DQ7866391Dinucleotide(TG)71481..94115  bpPrimer
DQ7866481Dinucleotide(GA)71483..96154  bpPrimer
DQ7866482Dinucleotide(GA)91899..116154  bpPrimer
DQ7866511Dinucleotide(CA)132639..64373  bpPrimer
DQ7866512Dinucleotide(GA)714105..118373  bpPrimer
DQ7866331Dinucleotide(TG)61239..50346  bpPrimer
 
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