Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chanos chanos [9]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
ON3921521Trinucleotide(ATT)618177..194251  bpPrimer
ON3921561Tetranucleotide(CTAT)5201..20502  bpPrimer
ON3921562Tetranucleotide(TCTA)52056..75502  bpPrimer
ON3921563Tetranucleotide(TCTA)1872216..287502  bpPrimer
ON3921541Trinucleotide(ACA)721160..180381  bpPrimer
ON3921542Tetranucleotide(TAGA)1248231..278381  bpPrimer
ON3921543Dinucleotide(TG)816307..322381  bpPrimer
ON3921544Dinucleotide(GT)1122324..345381  bpPrimer
ON3921545Dinucleotide(GT)918364..381381  bpPrimer
ON3921571Trinucleotide(ATT)721221..241401  bpPrimer
ON3921501Tetranucleotide(TTCT)728197..224351  bpPrimer
ON3921551Dinucleotide(GT)61298..109351  bpPrimer
ON3921552Tetranucleotide(TATC)1976157..232351  bpPrimer
ON3921581c*(CT)11(TCT)7*40213..252502  bpPrimer
ON3921531Tetranucleotide(AAGA)1560164..223401  bpPrimer
ON3921511Tetranucleotide(TCTT)832183..214301  bpPrimer
 
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