Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Carcharhinus melanopterus [58]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
OM8031191Trinucleotide(CAT)824148..171430  bpPrimer
OL4690801Dinucleotide(TC)2346175..220351  bpPrimer
OL4690802Dinucleotide(TC)1122232..253351  bpPrimer
OL4690803Dinucleotide(TC)612268..279351  bpPrimer
OL4690781Dinucleotide(AG)2448397..444686  bpPrimer
OM8031251Tetranucleotide(AAAC)728112..139236  bpPrimer
OM8031221Dinucleotide(CA)153086..115401  bpPrimer
OM8030981Dinucleotide(AC)1428126..153356  bpPrimer
OM8031201Dinucleotide(AC)1326131..156346  bpPrimer
OL4690771Dinucleotide(TG)1938202..239335  bpPrimer
OL4690951Tetranucleotide(CTTT)104058..97315  bpPrimer
OM8031071Dinucleotide(GT)1428237..264328  bpPrimer
OL4690751Tetranucleotide(TATC)1248303..350537  bpPrimer
OM8031131Dinucleotide(CA)163294..125275  bpPrimer
OM8031211Dinucleotide(AT)1428233..260401  bpPrimer
OM8030941Trinucleotide(TCC)618301..318410  bpPrimer
OM8031141Trinucleotide(CAT)927212..238401  bpPrimer
OL4690931Composite(TC)6(GT)2052108..159385  bpPrimer
OM8031261Dinucleotide(AC)2856126..181319  bpPrimer
OL4690891Dinucleotide(TA)612449..460791  bpPrimer
OL4690892Dinucleotide(AC)1938467..504791  bpPrimer
OM8030931Tetranucleotide(TCTA)624134..157242  bpPrimer
OM8031231Trinucleotide(CAT)92747..73369  bpPrimer
OM8031161Dinucleotide(AT)112292..113361  bpPrimer
OM8031051Tetranucleotide(TCCC)520234..253334  bpPrimer
OM8031151Trinucleotide(TCA)721301..321398  bpPrimer
OM8031041Dinucleotide(CA)163291..122318  bpPrimer
OL4690851Dinucleotide(TC)1632124..155448  bpPrimer
OM8031081Dinucleotide(AC)1224147..170300  bpPrimer
OL4690811Dinucleotide(GT)1326221..246590  bpPrimer
OL4690812Dinucleotide(GT)2244465..508590  bpPrimer
OM8031181Dinucleotide(AC)1632156..187345  bpPrimer
OL4690961Composite(ACT)15(ACA)766283..348482  bpPrimer
OM8031091Trinucleotide(TAC)618195..212414  bpPrimer
OL4690821Dinucleotide(GA)224442..85217  bpPrimer
OM8031021Tetranucleotide(CCTG)52066..85321  bpPrimer
OL4690861Dinucleotide(CA)1938117..154236  bpPrimer
OL4690921Dinucleotide(TC)2040508..547789  bpPrimer
OL4690831Tetranucleotide(TAGT)1248126..173447  bpPrimer
OL4690761Dinucleotide(CT)1836164..199303  bpPrimer
OL4690871Dinucleotide(TC)1836147..182377  bpPrimer
OM8030971Dinucleotide(CA)142860..87379  bpPrimer
OL4690911Dinucleotide(CT)2040142..181248  bpPrimer
OM8031121Dinucleotide(GT)163281..112253  bpPrimer
OM8031111Dinucleotide(GA)173464..97291  bpPrimer
OL4690901Dinucleotide(TC)1938165..202454  bpPrimer
OL4690941Dinucleotide(AC)2244169..212433  bpPrimer
OM8031101Trinucleotide(AGG)824185..208314  bpPrimer
OM8030961Trinucleotide(ATT)721141..161341  bpPrimer
OM8030951Trinucleotide(TTA)824168..191290  bpPrimer
OM8031001Tetranucleotide(CTAT)72863..90297  bpPrimer
OM8031031Dinucleotide(AG)173497..130268  bpPrimer
OM8031171Dinucleotide(AC)1836243..278329  bpPrimer
OL4690791Dinucleotide(TG)2448418..465629  bpPrimer
OM8031011Dinucleotide(CA)2040113..152302  bpPrimer
OM8031241Dinucleotide(GT)1326202..227289  bpPrimer
OL4690841Dinucleotide(TC)1632127..158478  bpPrimer
OM8030991Dinucleotide(CA)163276..107377  bpPrimer
OM8031061Dinucleotide(GT)1326141..166335  bpPrimer
OL4690881Dinucleotide(GA)1836365..400465  bpPrimer
OM8031281Dinucleotide(TG)1632119..150408  bpPrimer
 
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