Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Taenioides cirratus [15]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MZ0207481Trinucleotide(ATA)206023..82154  bpPrimer
MZ0207491Trinucleotide(TAG)113399..131156  bpPrimer
MZ0207401Tetranucleotide(TAGA)114444..87151  bpPrimer
MZ0207511Tetranucleotide(TTTA)62432..55109  bpPrimer
MZ0207521Dinucleotide(TA)81639..54134  bpPrimer
MZ0207451Dinucleotide(AC)112268..89138  bpPrimer
MZ0207441Tetranucleotide(CTTT)72869..96139  bpPrimer
MZ0207421Pentanucleotide(TAGAA)94547..91138  bpPrimer
MZ0207411Trinucleotide(GTA)103032..61129  bpPrimer
MZ0207461Dinucleotide(AC)132623..48142  bpPrimer
MZ0207471Hexanucleotide(ATAATG)95436..89134  bpPrimer
MZ0207501Dinucleotide(TA)61240..51132  bpPrimer
MZ0207391Dinucleotide(TA)91849..66103  bpPrimer
MZ0207431Dinucleotide(TA)71454..67119  bpPrimer
MZ0207381Trinucleotide(ATA)113353..85130  bpPrimer
 
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