Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Tor khudree [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
MT8192611Dinucleotide(AC)1938294..331376  bpPrimer
MT8192551Dinucleotide(TG)2142205..246308  bpPrimer
MT8192601Dinucleotide(TG)2142134..175425  bpPrimer
MT8192602Dinucleotide(TC)1530306..335425  bpPrimer
MT8192651Dinucleotide(CA)1938199..236393  bpPrimer
MT8192661Dinucleotide(AC)1020148..167229  bpPrimer
MT8192591Dinucleotide(TG)1530311..340790  bpPrimer
MT8192671Dinucleotide(AC)153097..126224  bpPrimer
MT8192621Dinucleotide(CA)214274..115417  bpPrimer
MT8192622Dinucleotide(CA)816126..141417  bpPrimer
MT8192623Dinucleotide(CA)2040335..374417  bpPrimer
MT8192541Mononucleotide(A)1010140..1491024  bpPrimer
MT8192542Dinucleotide(GT)1938215..2521024  bpPrimer
MT8192543Dinucleotide(TG)1836469..5041024  bpPrimer
MT8192631Dinucleotide(AC)1836105..140201  bpPrimer
MT8192581Dinucleotide(TG)1122184..205362  bpPrimer
MT8192641Dinucleotide(AC)1632744..7751086  bpPrimer
MT8192561Dinucleotide(AC)102055..74297  bpPrimer
MT8192571Dinucleotide(CA)132665..90281  bpPrimer
 
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