Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sinilabeo dero [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ4913961Dinucleotide(TG)71468..81118  bpPrimer
GQ4874691Dinucleotide(GT)122423..4658  bpPrimer
FJ4914021Dinucleotide(AC)10208..2778  bpPrimer
FJ4914031Dinucleotide(GT)11229..3063  bpPrimer
FJ4913981Dinucleotide(AC)81614..29107  bpPrimer
FJ4913971Dinucleotide(TG)81628..4365  bpPrimer
AF5179381Tetranucleotide(ATAC)62459..8296  bpPrimer
GQ4874721Dinucleotide(AC)71418..3166  bpPrimer
GQ4874731Dinucleotide(CA)91841..5894  bpPrimer
GQ4874732Dinucleotide(AC)61271..8294  bpPrimer
GQ4874701Dinucleotide(CA)102011..30101  bpPrimer
FJ4913951Composite(TG)9(AG)73259..90131  bpPrimer
FJ4913991Dinucleotide(AC)61221..32158  bpPrimer
FJ4913992Dinucleotide(CA)714109..122158  bpPrimer
FJ4914011Composite(TCTA)5(TCTG)5(TCTA)66415..78136  bpPrimer
GQ4874681Dinucleotide(CA)153021..5060  bpPrimer
GQ4874791Composite(TG)8(TC)113862..99100  bpPrimer
GQ4874671Dinucleotide(CA)16329..4060  bpPrimer
GQ4874711Dinucleotide(TG)132637..6290  bpPrimer
 
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