Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Trigla lucerna [32]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AM3986711Dinucleotide(GA)1632112..143616  bpPrimer
AM3986712Dinucleotide(GT)612283..294616  bpPrimer
AM3986713Dinucleotide(GT)612297..308616  bpPrimer
AM3986714Dinucleotide(GA)918391..408616  bpPrimer
AM3986721Dinucleotide(GA)1632112..143616  bpPrimer
AM3986722Dinucleotide(GT)612283..294616  bpPrimer
AM3986723Dinucleotide(GT)612297..308616  bpPrimer
AM3986724Dinucleotide(GA)918391..408616  bpPrimer
AM3986631Mononucleotide(A)101038..47277  bpPrimer
AM3986632Dinucleotide(TG)81695..110277  bpPrimer
AM3986741Dinucleotide(AC)816406..421461  bpPrimer
AM3986651Dinucleotide(AC)1938487..524707  bpPrimer
AM3986661Dinucleotide(CA)816196..211262  bpPrimer
AM3986551Dinucleotide(CA)714168..181251  bpPrimer
AM3986751Dinucleotide(GT)1326408..433553  bpPrimer
AM3986691Dinucleotide(AC)153071..100314  bpPrimer
AM3986771Dinucleotide(CA)102035..54370  bpPrimer
AM3986791Dinucleotide(CA)2142187..228391  bpPrimer
AM3986792Dinucleotide(CA)714337..350391  bpPrimer
AM3986701Dinucleotide(GA)1632112..143616  bpPrimer
AM3986702Dinucleotide(GT)612283..294616  bpPrimer
AM3986703Dinucleotide(GT)612297..308616  bpPrimer
AM3986704Dinucleotide(GA)918391..408616  bpPrimer
AM3986681Dinucleotide(CA)1224115..138170  bpPrimer
AM3986491Dinucleotide(TG)193836..73340  bpPrimer
AM3986601Dinucleotide(CA)2142146..187342  bpPrimer
AM3986581Dinucleotide(CA)1224159..182325  bpPrimer
AM3986611Dinucleotide(GT)214246..87318  bpPrimer
AM3986761Dinucleotide(CA)2652112..163233  bpPrimer
AM3986781Dinucleotide(AC)1530217..246506  bpPrimer
AM3986782Trinucleotide(GAG)515372..386506  bpPrimer
AM3986541Dinucleotide(TG)2244119..162384  bpPrimer
AM3986801Dinucleotide(AC)1836349..384446  bpPrimer
AM3986531Dinucleotide(GT)714110..123410  bpPrimer
AM3986561Dinucleotide(CA)918273..290435  bpPrimer
AM3986731Composite(GT)14(G)1038444..481633  bpPrimer
AM3986511Dinucleotide(CA)1428102..129513  bpPrimer
AM3986501Dinucleotide(TG)1734113..146460  bpPrimer
AM3986571Dinucleotide(GT)1224342..365495  bpPrimer
AM3986591Dinucleotide(CA)1122171..192437  bpPrimer
AM3986592Dinucleotide(CT)612377..388437  bpPrimer
 
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