Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Tanganicodus irsacae [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ4070641Dinucleotide(AC)2040102..141177  bpPrimer
AJ4070601Dinucleotide(AC)612126..137312  bpPrimer
AJ4070611Dinucleotide(AC)612126..137312  bpPrimer
AJ4070701Dinucleotide(CA)2244239..282362  bpPrimer
AJ4070691Dinucleotide(CA)2652243..294374  bpPrimer
AJ4070741Dinucleotide(AC)81675..90144  bpPrimer
AJ4070541Dinucleotide(TG)918255..272313  bpPrimer
AJ4070761Dinucleotide(CA)132699..124162  bpPrimer
AJ4070711Dinucleotide(AC)71475..88142  bpPrimer
AJ4070511Dinucleotide(CA)71495..108176  bpPrimer
AJ4070531Dinucleotide(GT)71447..60124  bpPrimer
AJ4070532Mononucleotide(T)151565..79124  bpPrimer
 
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