Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sparus aurata [6]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
Y172621Dinucleotide(TG)275468..121338  bpPrimer
Y172622Dinucleotide(GT)714123..136338  bpPrimer
Y172623Dinucleotide(AC)1326212..237338  bpPrimer
Y172651Dinucleotide(TG)255024..73154  bpPrimer
Y172652Dinucleotide(GT)81675..90154  bpPrimer
Y172641Dinucleotide(CA)3264199..262333  bpPrimer
Y181031Dinucleotide(TG)918180..197308  bpPrimer
Y172631Dinucleotide(TG)275468..121338  bpPrimer
Y172632Dinucleotide(GT)714123..136338  bpPrimer
Y172633Dinucleotide(AC)1326212..237338  bpPrimer
Y172661Dinucleotide(CA)816172..187349  bpPrimer
Y172662Dinucleotide(CA)3162190..251349  bpPrimer
 
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