Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Serranus cabrilla [34]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AM0494361Dinucleotide(TC)1122116..137231  bpPrimer
AM0494241Dinucleotide(TG)214268..109280  bpPrimer
AM0494242Dinucleotide(GT)714231..244280  bpPrimer
AM0494071Dinucleotide(TC)142844..71219  bpPrimer
AM0494181Dinucleotide(GT)1224112..135274  bpPrimer
AM0494351Dinucleotide(GA)1428236..263278  bpPrimer
AM0494191Dinucleotide(AC)714319..332830  bpPrimer
AM0494111Dinucleotide(CT)918215..232312  bpPrimer
AM0494151Dinucleotide(TG)244835..82259  bpPrimer
AM0494331Composite(GT)17(GA)248276..157228  bpPrimer
AM0494101Dinucleotide(GT)1122184..205293  bpPrimer
AM0494251Dinucleotide(TG)71499..112219  bpPrimer
AM0494252Dinucleotide(GT)714114..127219  bpPrimer
AM0494091Dinucleotide(CA)1020130..149283  bpPrimer
AM0494281Dinucleotide(GT)1326191..216217  bpPrimer
AM0494211Dinucleotide(CA)16321..32224  bpPrimer
AM0494212Trinucleotide(TCA)1339169..207224  bpPrimer
AM0494171Dinucleotide(TG)132692..117233  bpPrimer
AM0494271Dinucleotide(TG)112274..95175  bpPrimer
AM0494272Dinucleotide(GT)3162107..168175  bpPrimer
AM0494221Dinucleotide(AC)173446..79147  bpPrimer
AM0494201Dinucleotide(CA)918165..182209  bpPrimer
AM0494301Dinucleotide(AC)1224109..132242  bpPrimer
AM0494131Dinucleotide(TC)61282..93200  bpPrimer
AM0494371Dinucleotide(CT)1020144..163360  bpPrimer
AM0494161Dinucleotide(TG)91893..110268  bpPrimer
AM0494321Dinucleotide(TG)61231..42237  bpPrimer
AM0494322Dinucleotide(GT)714148..161237  bpPrimer
AM0494323Dinucleotide(GT)816166..181237  bpPrimer
AM0494324Dinucleotide(GA)612188..199237  bpPrimer
AM0494081Dinucleotide(AC)1020104..123167  bpPrimer
AM0494061Dinucleotide(AG)142875..102268  bpPrimer
AM0494231Dinucleotide(CT)173449..82230  bpPrimer
AM0494381Dinucleotide(AG)714138..151164  bpPrimer
AM0494051Dinucleotide(TC)102096..115201  bpPrimer
AM0494052Dinucleotide(CT)612128..139201  bpPrimer
AM0494291Dinucleotide(GT)1428200..227234  bpPrimer
AM0494121Dinucleotide(GT)816152..167220  bpPrimer
AM0494341Dinucleotide(TG)61231..42198  bpPrimer
AM0494342Dinucleotide(GA)1938135..172198  bpPrimer
AM0494141Dinucleotide(CA)1224112..135235  bpPrimer
AM0494261Dinucleotide(CA)521041..104167  bpPrimer
 
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