Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Sebastes chrysomelas [1]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF3271321Trinucleotide(GAG)5151068..108219349  bpPrimer
JF3271322Dinucleotide(CA)17347354..738719349  bpPrimer
JF3271323c*(A)10(AT)11*3110785..1081519349  bpPrimer
JF3271324Dinucleotide(GT)122412321..1234419349  bpPrimer
JF3271325Trinucleotide(TTA)61812828..1284519349  bpPrimer
JF3271326Mononucleotide(G)121213237..1324819349  bpPrimer
JF3271327Mononucleotide(T)141413915..1392819349  bpPrimer
JF3271328Dinucleotide(AC)61214355..1436619349  bpPrimer
JF3271329Dinucleotide(AT)112215871..1589219349  bpPrimer
JF32713210Mononucleotide(T)101016681..1669019349  bpPrimer
JF32713211Mononucleotide(G)131316811..1682319349  bpPrimer
 
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