Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Schizothorax richardsonii [104]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
HM5912411Dinucleotide(GT)306072..131332  bpPrimer
HM5912731Dinucleotide(AC)1326144..169363  bpPrimer
HM5912732Dinucleotide(AC)714194..207363  bpPrimer
HM5912733Dinucleotide(AC)1020221..240363  bpPrimer
HM5912734Dinucleotide(AC)1428248..275363  bpPrimer
HM5912421Dinucleotide(CA)612130..141563  bpPrimer
HM5912391Dinucleotide(TG)173439..72555  bpPrimer
HM5912392Composite(GT)7(CT)72880..107555  bpPrimer
HM5912831Dinucleotide(CA)142888..115598  bpPrimer
HM5912832Dinucleotide(CT)816194..209598  bpPrimer
HM5912833Dinucleotide(CA)1632368..399598  bpPrimer
HM5912834Dinucleotide(CA)714402..415598  bpPrimer
HM5912821Dinucleotide(TG)173439..72466  bpPrimer
HM5912822Composite(GT)7(CT)72880..107466  bpPrimer
HM5912721Dinucleotide(CA)918192..209640  bpPrimer
HM5912722Dinucleotide(CA)816264..279640  bpPrimer
HM5912723Dinucleotide(CA)1734360..393640  bpPrimer
HM5912724Dinucleotide(CT)816410..425640  bpPrimer
HM5912551Dinucleotide(AC)1632145..176604  bpPrimer
HM5912552Dinucleotide(AC)2754178..231604  bpPrimer
HM5912401Dinucleotide(AC)1530246..275680  bpPrimer
HM5912402Dinucleotide(CA)51102277..378680  bpPrimer
HM5912403Dinucleotide(AC)1224400..423680  bpPrimer
HM5912404Dinucleotide(AC)2040454..493680  bpPrimer
HM5912461Dinucleotide(AC)1836175..210423  bpPrimer
HM5912681Trinucleotide(TTG)51526..40428  bpPrimer
HM5912682Dinucleotide(GT)3366186..251428  bpPrimer
HM5912801Dinucleotide(AC)163264..95506  bpPrimer
HM5912802Dinucleotide(CA)612101..112506  bpPrimer
HM5912803Composite(CT)6(CA)1542117..158506  bpPrimer
HM5912804Dinucleotide(CA)612161..172506  bpPrimer
HM5912805Dinucleotide(CA)918205..222506  bpPrimer
HM5912806Dinucleotide(CA)612253..264506  bpPrimer
HM5912807Dinucleotide(CA)918273..290506  bpPrimer
HM5912691Dinucleotide(AC)1326144..169479  bpPrimer
HM5912692Dinucleotide(AC)714194..207479  bpPrimer
HM5912693Dinucleotide(AC)1020221..240479  bpPrimer
HM5912694Dinucleotide(AC)1428248..275479  bpPrimer
HM5912361Dinucleotide(AC)8316677..242790  bpPrimer
HM5912362Dinucleotide(CA)2448248..295790  bpPrimer
HM5912363Dinucleotide(CA)1632302..333790  bpPrimer
HM5912511Dinucleotide(CA)1122130..151328  bpPrimer
HM5912512Dinucleotide(AC)612155..166328  bpPrimer
HM5912513Dinucleotide(AC)816187..202328  bpPrimer
HM5912514Dinucleotide(AC)714211..224328  bpPrimer
HM5912515Dinucleotide(AC)1224247..270328  bpPrimer
HM5912671Trinucleotide(GAG)51571..85453  bpPrimer
HM5912672Dinucleotide(CA)2550185..234453  bpPrimer
HM5912751Dinucleotide(AC)244848..95311  bpPrimer
HM5912431Trinucleotide(TTG)51526..40363  bpPrimer
HM5912432Dinucleotide(GT)4386186..271363  bpPrimer
HM5912531Dinucleotide(TC)714178..191690  bpPrimer
HM5912532Dinucleotide(GT)612388..399690  bpPrimer
HM5912533Dinucleotide(GT)2856414..469690  bpPrimer
HM5912591Dinucleotide(CA)56112133..244800  bpPrimer
HM5912592Composite(CACT)18(CA)16104253..356800  bpPrimer
HM5912593Dinucleotide(CA)612383..394800  bpPrimer
HM5912594Dinucleotide(CA)612397..408800  bpPrimer
HM5912641Dinucleotide(CA)224444..87492  bpPrimer
HM5912642Dinucleotide(CA)1734104..137492  bpPrimer
HM5912643Dinucleotide(CA)612340..351492  bpPrimer
HM5912571Dinucleotide(TG)193841..78489  bpPrimer
HM5912572Dinucleotide(GA)816147..162489  bpPrimer
HM5912761Dinucleotide(TG)1530180..209482  bpPrimer
HM5912762Dinucleotide(GT)2448211..258482  bpPrimer
HM5912771Mononucleotide(A)1212614..625866  bpPrimer
HM5912621Dinucleotide(TG)173439..72466  bpPrimer
HM5912622Composite(GT)7(CT)72880..107466  bpPrimer
HM5912741Dinucleotide(CA)2040112..151441  bpPrimer
HM5912742Dinucleotide(AC)612153..164441  bpPrimer
HM5912743Dinucleotide(CA)714184..197441  bpPrimer
HM5912744Dinucleotide(CA)1122214..235441  bpPrimer
HM5912745Dinucleotide(CA)1020258..277441  bpPrimer
HM5912581Dinucleotide(TG)71450..63477  bpPrimer
HM5912582Dinucleotide(GT)234665..110477  bpPrimer
HM5912491Dinucleotide(AC)193892..129569  bpPrimer
HM5912441Dinucleotide(AC)1836281..316642  bpPrimer
HM5912442Composite(AC)6(AG)6(AC)1452327..378642  bpPrimer
HM5912443Dinucleotide(CA)918380..397642  bpPrimer
HM5912444Dinucleotide(CA)816408..423642  bpPrimer
HM5912445Dinucleotide(AC)1326429..454642  bpPrimer
HM5912446Dinucleotide(CA)1122458..479642  bpPrimer
HM5912447Dinucleotide(CA)612496..507642  bpPrimer
HM5912448Dinucleotide(CA)714514..527642  bpPrimer
HM5912449Dinucleotide(CA)1122564..585642  bpPrimer
HM59124410Dinucleotide(AC)1224589..612642  bpPrimer
HM5912501Dinucleotide(CA)52104286..389771  bpPrimer
HM5912611Dinucleotide(CA)1428122..149631  bpPrimer
HM5912612Dinucleotide(CT)816228..243631  bpPrimer
HM5912613Dinucleotide(CA)1632402..433631  bpPrimer
HM5912614Dinucleotide(CA)714436..449631  bpPrimer
HM5912541Dinucleotide(GT)1122262..283738  bpPrimer
HM5912542Dinucleotide(GT)714316..329738  bpPrimer
HM5912543Dinucleotide(GT)612348..359738  bpPrimer
HM5912544Dinucleotide(GT)612366..377738  bpPrimer
HM5912545Composite(GT)6(GA)624384..407738  bpPrimer
HM5912546Dinucleotide(TG)1632409..440738  bpPrimer
HM5912711Dinucleotide(CA)2448123..170841  bpPrimer
HM5912712Dinucleotide(CA)612173..184841  bpPrimer
HM5912713Dinucleotide(CA)64128187..314841  bpPrimer
HM5912714Dinucleotide(AC)1224338..361841  bpPrimer
HM5912715Dinucleotide(CA)1224377..400841  bpPrimer
HM5912601Dinucleotide(TG)234670..115669  bpPrimer
HM5912602Dinucleotide(TG)714118..131669  bpPrimer
HM5912603Dinucleotide(GT)612167..178669  bpPrimer
HM5912631Dinucleotide(TG)918102..119529  bpPrimer
HM5912632Dinucleotide(GT)1020161..180529  bpPrimer
HM5912633Dinucleotide(GT)1224225..248529  bpPrimer
HM5912634Dinucleotide(TG)816302..317529  bpPrimer
HM5912561Dinucleotide(TG)1530180..209387  bpPrimer
HM5912562Dinucleotide(GT)2448211..258387  bpPrimer
HM5912351Dinucleotide(AC)61235..46184  bpPrimer
HM5912371Dinucleotide(CA)346847..114250  bpPrimer
HM5912811Dinucleotide(CA)2040112..151332  bpPrimer
HM5912812Dinucleotide(AC)612153..164332  bpPrimer
HM5912813Dinucleotide(CA)714184..197332  bpPrimer
HM5912814Dinucleotide(CA)1122214..235332  bpPrimer
HM5912815Dinucleotide(CA)1020258..277332  bpPrimer
HM5912381Dinucleotide(CA)142888..115754  bpPrimer
HM5912382Dinucleotide(CT)816194..209754  bpPrimer
HM5912383Dinucleotide(CA)1632368..399754  bpPrimer
HM5912384Dinucleotide(CA)714402..415754  bpPrimer
HM5912701Dinucleotide(CA)2040132..171569  bpPrimer
HM5912702Dinucleotide(AC)612183..194569  bpPrimer
HM5912703Dinucleotide(AC)714197..210569  bpPrimer
HM5912704Dinucleotide(AC)1428213..240569  bpPrimer
HM5912705Dinucleotide(CA)3060242..301569  bpPrimer
HM5912706Dinucleotide(AC)2040343..382569  bpPrimer
HM5912707Dinucleotide(AC)612413..424569  bpPrimer
HM5912708Dinucleotide(CA)1020448..467569  bpPrimer
JN1281511Dinucleotide(CA)1938123..160319  bpPrimer
JN1281601Dinucleotide(GT)2346144..189657  bpPrimer
JN1281481Dinucleotide(GT)1938329..366482  bpPrimer
JN1281501Dinucleotide(GT)204071..110417  bpPrimer
JN1281281Mononucleotide(A)1010244..253415  bpPrimer
JN1281291Dinucleotide(AC)1122293..314483  bpPrimer
JN1281521Dinucleotide(AC)4386260..345464  bpPrimer
JN1281491Dinucleotide(AC)612111..122235  bpPrimer
JN1281492Dinucleotide(CA)3570124..193235  bpPrimer
JN1281511Dinucleotide(CA)1938123..160319  bpPrimer
JN1281501Dinucleotide(GT)204071..110417  bpPrimer
JN1281281Mononucleotide(A)1010244..253415  bpPrimer
JN1281601Dinucleotide(GT)2346144..189657  bpPrimer
JN1281291Dinucleotide(AC)1122293..314483  bpPrimer
 
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