Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Rhodeus sericeus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ4878251Dinucleotide(GT)112272..93200  bpPrimer
AJ4878171Dinucleotide(AC)71426..39142  bpPrimer
AJ4878172Dinucleotide(TC)112282..103142  bpPrimer
AJ4878121Dinucleotide(GT)193817..54297  bpPrimer
AJ4878122Dinucleotide(TG)816233..248297  bpPrimer
AJ4878271Dinucleotide(TG)714133..146307  bpPrimer
AJ4878272Dinucleotide(GT)4386210..295307  bpPrimer
AJ4878261Dinucleotide(GT)265218..6982  bpPrimer
AJ4878131Dinucleotide(TG)163223..54180  bpPrimer
AJ4878161Dinucleotide(AC)81633..48110  bpPrimer
AJ4878162Dinucleotide(AC)234653..98110  bpPrimer
AJ4878281Composite(CT)16(CA)10(CT)15(CA)910050..149172  bpPrimer
AJ4878151Dinucleotide(GT)153038..67189  bpPrimer
AJ4878152Dinucleotide(TG)61297..108189  bpPrimer
AJ4878153Dinucleotide(GT)918162..179189  bpPrimer
AJ4878201Dinucleotide(GT)142848..75111  bpPrimer
AJ4878181Dinucleotide(TG)91846..63122  bpPrimer
AJ4878182Dinucleotide(TG)61288..99122  bpPrimer
AJ4878191Dinucleotide(GA)1428162..189356  bpPrimer
AJ4878192Dinucleotide(AG)612207..218356  bpPrimer
AJ4878193Dinucleotide(GA)612222..233356  bpPrimer
AJ4878194Dinucleotide(GT)918297..314356  bpPrimer
AJ4878221Composite(GT)7(TG)409461..154164  bpPrimer
AJ4878231Dinucleotide(AC)224412..55135  bpPrimer
AJ4878141Dinucleotide(CA)112224..45249  bpPrimer
AJ4878142Dinucleotide(CA)61280..91249  bpPrimer
AJ4878143c*(CTCA)5(CA)8*34108..141249  bpPrimer
AJ4878211Dinucleotide(AC)102043..62212  bpPrimer
AJ4878212Dinucleotide(GA)1020101..120212  bpPrimer
AJ4878241Dinucleotide(GT)84168218..385432  bpPrimer
 
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