Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Potamotrygon motoro [10]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC8330611Dinucleotide(GA)81678..93437  bpPrimer
KC8330581Dinucleotide(AC)1122173..194417  bpPrimer
KC8330601Dinucleotide(GC)81630..45411  bpPrimer
KC8330602Dinucleotide(TG)91847..64411  bpPrimer
KC8330561Dinucleotide(GT)918321..338454  bpPrimer
KC8330621Dinucleotide(AC)918109..126316  bpPrimer
KC8330541Dinucleotide(TG)1122204..225395  bpPrimer
KC8330631Trinucleotide(AAC)515165..179373  bpPrimer
KC8330571Dinucleotide(AC)714232..245384  bpPrimer
KC8330572Dinucleotide(CA)1122259..280384  bpPrimer
KC8330551Dinucleotide(TC)918228..245368  bpPrimer
KC8330591Dinucleotide(TG)1020143..162455  bpPrimer
 
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