Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Poecilia formosa [19]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ8104581Dinucleotide(AC)2652155..206252  bpPrimer
AJ8104601Dinucleotide(GA)265284..135259  bpPrimer
AJ8104701Dinucleotide(AG)224438..81145  bpPrimer
AJ8104661Dinucleotide(GT)1020136..155341  bpPrimer
AJ8104641Dinucleotide(TG)102033..52252  bpPrimer
AJ8104621Dinucleotide(GA)163254..85203  bpPrimer
AJ8104631Dinucleotide(TG)81633..48247  bpPrimer
AJ8104721Dinucleotide(TG)61221..32144  bpPrimer
AJ8104722Dinucleotide(GT)61236..47144  bpPrimer
AJ8104671Dinucleotide(AG)122479..102156  bpPrimer
AJ8104731Dinucleotide(TG)142859..86156  bpPrimer
AJ8104651Dinucleotide(GT)91855..72382  bpPrimer
AJ8104611Dinucleotide(GA)1428316..343410  bpPrimer
AJ8104681Dinucleotide(AG)102078..97153  bpPrimer
AJ8104591Composite(GA)27(GT)87046..115238  bpPrimer
AJ8104561Dinucleotide(GA)224481..124192  bpPrimer
AJ8104691Dinucleotide(GA)132683..108131  bpPrimer
AJ8104741Dinucleotide(TG)102082..101177  bpPrimer
AJ8104571Dinucleotide(AG)612117..128225  bpPrimer
AJ8104572Dinucleotide(AG)816131..146225  bpPrimer
AJ8104573Dinucleotide(GA)918160..177225  bpPrimer
AJ8104711Dinucleotide(TG)612139..150199  bpPrimer
 
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