Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Platichthys flesus [28]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ5383161Tetranucleotide(AGAC)72895..122289  bpPrimer
AJ5383131Dinucleotide(TG)61212..23270  bpPrimer
AJ5383132Dinucleotide(GT)612107..118270  bpPrimer
AJ5383133Tetranucleotide(GACA)728221..248270  bpPrimer
AJ5383271Dinucleotide(GA)918141..158302  bpPrimer
AJ5383111Tetranucleotide(CAGA)520253..272373  bpPrimer
AJ5383051Composite(GT)8(GA)83250..81447  bpPrimer
AJ5383052Tetranucleotide(GACA)104088..127447  bpPrimer
AJ5383053Tetranucleotide(AGAC)520147..166447  bpPrimer
AJ5383081Tetranucleotide(CTGT)936164..199308  bpPrimer
AJ5383261Dinucleotide(AC)112220..41842  bpPrimer
AJ5383262Dinucleotide(GT)714479..492842  bpPrimer
AJ5383263Dinucleotide(TC)612545..556842  bpPrimer
AJ5383141Tetranucleotide(TAGA)1040188..227316  bpPrimer
AJ5383142Tetranucleotide(TAGA)1144232..275316  bpPrimer
AJ5383251Dinucleotide(GA)193876..113692  bpPrimer
AJ5383221Trinucleotide(TCC)721221..241358  bpPrimer
AJ5383121Tetranucleotide(CAGA)520218..237469  bpPrimer
AJ3159701Dinucleotide(TG)61233..44310  bpPrimer
AJ3159702Tetranucleotide(ATCT)114456..99310  bpPrimer
AJ3159721Tetranucleotide(ATAG)32128138..265544  bpPrimer
AJ5383061Tetranucleotide(ATAG)832177..208431  bpPrimer
AJ5383151Tetranucleotide(AGAT)1872223..294687  bpPrimer
AJ5383152Tetranucleotide(GATA)520318..337687  bpPrimer
AJ5383211Dinucleotide(CA)1428177..204608  bpPrimer
AJ5383071Tetranucleotide(TAGA)124895..142573  bpPrimer
AJ5383072Tetranucleotide(AGAT)624160..183573  bpPrimer
AJ5383073Tetranucleotide(AGAT)1872210..281573  bpPrimer
AJ3159751Tetranucleotide(CTGT)72864..91219  bpPrimer
AJ5383171Trinucleotide(GCT)1442222..263604  bpPrimer
AJ5383172Trinucleotide(GCT)824288..311604  bpPrimer
AJ5383201Tetranucleotide(ATCT)1248191..238317  bpPrimer
AJ5383091Tetranucleotide(TCTA)1144218..261439  bpPrimer
AJ5383092Tetranucleotide(TGTC)728276..303439  bpPrimer
AJ5383191Composite(TCA)7(TCC)536155..190335  bpPrimer
AJ3159741Dinucleotide(GT)102057..76173  bpPrimer
AJ3159731Dinucleotide(CT)183680..115195  bpPrimer
AJ5383181Dinucleotide(AC)1020274..293471  bpPrimer
AJ5383182Dinucleotide(CA)2040295..334471  bpPrimer
AJ5383231Dinucleotide(TG)102063..82229  bpPrimer
 
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