Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Paralichthys olivaceus [12]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
FJ1521761Dinucleotide(GA)122434..57185  bpPrimer
FJ1521762Dinucleotide(GT)81670..85185  bpPrimer
FJ1521721Composite(TG)8(AG)83225..56150  bpPrimer
FJ1521722Dinucleotide(GA)214258..99150  bpPrimer
FJ1521741Dinucleotide(TC)204053..92226  bpPrimer
FJ1521781Composite(GA)33(GT)882135..216234  bpPrimer
FJ1521701Dinucleotide(GT)1224101..124164  bpPrimer
FJ1521702Dinucleotide(GA)1326129..154164  bpPrimer
FJ1521801Dinucleotide(AC)1020284..303336  bpPrimer
FJ1521711Dinucleotide(AG)316214..75131  bpPrimer
FJ1521731Dinucleotide(AG)102019..38148  bpPrimer
FJ1521771Dinucleotide(AG)122427..50165  bpPrimer
FJ1521772Dinucleotide(AG)142888..115165  bpPrimer
FJ1521773Dinucleotide(AG)1734118..151165  bpPrimer
FJ1521791Dinucleotide(GA)326411..74117  bpPrimer
FJ1521751Dinucleotide(CT)1734151..184319  bpPrimer
 
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