Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Paralichthys lethostigma [98]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JF5020501Dinucleotide(AG)918101..118251  bpPrimer
JF5020502Dinucleotide(AT)612181..192251  bpPrimer
JF5020361Dinucleotide(AC)612136..147273  bpPrimer
JF5020491Dinucleotide(GT)816130..145351  bpPrimer
JF5020521Dinucleotide(GA)1020123..142196  bpPrimer
JF5020541Dinucleotide(GA)918115..132336  bpPrimer
JF5020561Composite(TG)6(AG)624119..142250  bpPrimer
JF5020562Dinucleotide(GT)918194..211250  bpPrimer
EF5818071Dinucleotide(AC)1632143..174518  bpPrimer
EF5818072Dinucleotide(AC)2346177..222518  bpPrimer
EF5818073Dinucleotide(AC)3264397..460518  bpPrimer
JQ9360021Dinucleotide(AG)193897..134210  bpPrimer
JQ9359941Dinucleotide(CA)3264113..176231  bpPrimer
JQ9359991Dinucleotide(AC)918145..162182  bpPrimer
JF5020421Dinucleotide(CA)71475..88169  bpPrimer
EF5818001Mononucleotide(C)1111246..256746  bpPrimer
EF5818002Dinucleotide(GT)1428622..649746  bpPrimer
EF5817941Dinucleotide(CA)2142388..429836  bpPrimer
EF5817901Dinucleotide(AG)1020497..516596  bpPrimer
EF5817981Dinucleotide(AC)1326200..225516  bpPrimer
JQ9359911Dinucleotide(AG)61258..69195  bpPrimer
JQ9359912Dinucleotide(AC)816142..157195  bpPrimer
JF5020581Dinucleotide(CA)173459..92288  bpPrimer
EF5817881Dinucleotide(AC)1632151..182542  bpPrimer
EF5817882Dinucleotide(CA)714428..441542  bpPrimer
DQ4900511Dinucleotide(CA)102030..49162  bpPrimer
DQ4900531Trinucleotide(TCC)72153..73188  bpPrimer
JQ9360101Dinucleotide(AC)316230..91245  bpPrimer
EF5818081Dinucleotide(AC)234678..123383  bpPrimer
EF5818082Mononucleotide(T)1616287..302383  bpPrimer
JQ9360071Dinucleotide(GT)816111..126174  bpPrimer
EF5817821Dinucleotide(GT)2652183..234542  bpPrimer
EF5817921Dinucleotide(CA)714359..372629  bpPrimer
EF5817951Dinucleotide(TG)3978153..230385  bpPrimer
EF5817952Dinucleotide(AC)612306..317385  bpPrimer
JF5020461Dinucleotide(AC)714204..217448  bpPrimer
EF5818091Dinucleotide(AC)132619..44549  bpPrimer
EF5818092Dinucleotide(AC)1020260..279549  bpPrimer
EF5817871Dinucleotide(GT)3162410..471534  bpPrimer
JQ9359811Dinucleotide(CA)2448102..149195  bpPrimer
JQ9359871Dinucleotide(AC)81669..84208  bpPrimer
EF5818111Dinucleotide(TG)918395..412543  bpPrimer
JQ9360111Dinucleotide(TG)816169..184207  bpPrimer
JQ9359881Dinucleotide(TG)326485..148221  bpPrimer
EF5817961Dinucleotide(AC)2652154..205458  bpPrimer
JQ9360151Dinucleotide(AC)2244123..166188  bpPrimer
JQ9359801Dinucleotide(AC)112231..52172  bpPrimer
DQ4900491Dinucleotide(GT)612152..163211  bpPrimer
JQ9360041Dinucleotide(GT)275421..74109  bpPrimer
JQ9359951Dinucleotide(CT)204032..71117  bpPrimer
JQ9360091Dinucleotide(AC)122451..74204  bpPrimer
JQ9360031Dinucleotide(GT)91832..49122  bpPrimer
JF5020571Dinucleotide(GA)153077..106493  bpPrimer
JF5020572Mononucleotide(T)1111483..493493  bpPrimer
JF5020381Dinucleotide(CA)122461..84263  bpPrimer
JQ9359971Dinucleotide(GT)1122105..126230  bpPrimer
EF5817861Dinucleotide(AC)5711430..143354  bpPrimer
EF5817862Dinucleotide(CA)1530145..174354  bpPrimer
JQ9359831Dinucleotide(CA)91831..48269  bpPrimer
EF5818021Dinucleotide(AC)1428116..143518  bpPrimer
JQ9360131Dinucleotide(AC)3468127..194217  bpPrimer
JF5020471Dinucleotide(AC)612104..115218  bpPrimer
JQ9360141Dinucleotide(GT)122453..76219  bpPrimer
JQ9359861Dinucleotide(TG)91894..111225  bpPrimer
EF5818011Dinucleotide(GT)71444..57472  bpPrimer
EF5818012Dinucleotide(GT)61280..91472  bpPrimer
JF5020371Dinucleotide(AC)2040110..149224  bpPrimer
DQ4900501Dinucleotide(TG)142861..88138  bpPrimer
EF5817911Dinucleotide(TG)234621..66388  bpPrimer
EF5817912Dinucleotide(GA)918254..271388  bpPrimer
EF5817913Dinucleotide(AG)918273..290388  bpPrimer
JQ9360061Dinucleotide(TG)102057..76107  bpPrimer
EF5817931Dinucleotide(GA)714133..146549  bpPrimer
EF5817932Dinucleotide(AG)1020166..185549  bpPrimer
EF5817933Dinucleotide(AC)4386385..470549  bpPrimer
EF5817971Trinucleotide(TCC)82419..42346  bpPrimer
EF5817972Dinucleotide(CA)3366187..252346  bpPrimer
JF5020441Dinucleotide(AC)1428359..386472  bpPrimer
JF5020401Dinucleotide(AC)2244150..193269  bpPrimer
JQ9360121Dinucleotide(AC)153034..63186  bpPrimer
EF5818031Dinucleotide(GT)1224391..414529  bpPrimer
JQ9359901Dinucleotide(AC)816108..123147  bpPrimer
EF5818061Dinucleotide(AG)61225..36502  bpPrimer
EF5818062Dinucleotide(CA)1428234..261502  bpPrimer
JF5020351Dinucleotide(AC)2346198..243294  bpPrimer
EF5817841Dinucleotide(CA)77154133..286497  bpPrimer
EF5818041Dinucleotide(AC)816144..159497  bpPrimer
EF5818051Composite(CACG)6(CA)3696122..217519  bpPrimer
EF5818052Dinucleotide(CA)612402..413519  bpPrimer
EF5817891Dinucleotide(TG)285682..137219  bpPrimer
JF5020511Dinucleotide(GA)714192..205264  bpPrimer
JQ9359931Dinucleotide(AC)91881..98254  bpPrimer
JF5020431Dinucleotide(CA)81639..54215  bpPrimer
DQ4900521Dinucleotide(TG)61295..106232  bpPrimer
JF5020391Dinucleotide(CA)1224171..194225  bpPrimer
JQ9360001Dinucleotide(AC)71434..4789  bpPrimer
JQ9359981Dinucleotide(CA)112221..42166  bpPrimer
EF5817851Dinucleotide(GT)2448217..264407  bpPrimer
JQ9359821Dinucleotide(CA)2346170..215257  bpPrimer
EF5817811Dinucleotide(TG)2958302..359616  bpPrimer
JF5020531Mononucleotide(T)1010148..157223  bpPrimer
JQ9359961Dinucleotide(GT)714197..210245  bpPrimer
JQ9360081Dinucleotide(CA)244848..95230  bpPrimer
JQ9360011Dinucleotide(TG)224439..82113  bpPrimer
JQ9359921Dinucleotide(TG)714225..238269  bpPrimer
JQ9359841Dinucleotide(TG)2652101..152260  bpPrimer
EF5817991Dinucleotide(AC)153057..86385  bpPrimer
EF5817831Dinucleotide(GT)2346268..313374  bpPrimer
JF5020481Dinucleotide(GA)61273..84279  bpPrimer
JQ9359891Dinucleotide(AC)224484..127298  bpPrimer
DQ4900541Trinucleotide(GGA)92721..47100  bpPrimer
EF5818101Dinucleotide(AC)132619..44549  bpPrimer
EF5818102Dinucleotide(AC)1020260..279549  bpPrimer
JQ9359851Dinucleotide(CA)173471..104224  bpPrimer
JQ9360051Dinucleotide(GA)265216..67102  bpPrimer
EF5817801Dinucleotide(TG)3060127..186337  bpPrimer
 
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