Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Ophioblennius atlanticus [7]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ8509981Dinucleotide(AC)816402..417511  bpPrimer
AJ8509991Mononucleotide(T)10101..10340  bpPrimer
AJ8509992Dinucleotide(AC)1020170..189340  bpPrimer
AJ8510031Dinucleotide(GT)1428364..391432  bpPrimer
AJ8510041Dinucleotide(CA)9183..20249  bpPrimer
AJ8510042Dinucleotide(AC)1734161..194249  bpPrimer
AJ8510021Dinucleotide(AC)153030..59325  bpPrimer
AJ8510011Dinucleotide(TG)1530234..263429  bpPrimer
AJ8510001Dinucleotide(CA)612313..324579  bpPrimer
AJ8510002Dinucleotide(CA)1122350..371579  bpPrimer
 
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