Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Oncorhynchus tshawytscha [85]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ5343651Tetranucleotide(TATG)4317273..244448  bpPrimer
AY0427091Dinucleotide(GA)61293..104243  bpPrimer
AY0427092Dinucleotide(AG)1836145..180243  bpPrimer
AY0427093Dinucleotide(AG)714196..209243  bpPrimer
AJ5343631Tetranucleotide(ATAC)28112293..404502  bpPrimer
AJ5343611Tetranucleotide(ATAC)135279..130410  bpPrimer
AJ5343601Tetranucleotide(TGTA)38152109..260389  bpPrimer
AJ5343602Tetranucleotide(GTAG)728274..301389  bpPrimer
AJ5343621Tetranucleotide(TTCT)2080405..484572  bpPrimer
AJ5343641Tetranucleotide(ACAT)2710895..202412  bpPrimer
AJ5343671Tetranucleotide(TCTT)1664219..282515  bpPrimer
AY0426981Dinucleotide(GA)91872..89321  bpPrimer
AY0426982Dinucleotide(GA)91892..109321  bpPrimer
AY0426983Dinucleotide(GA)918128..145321  bpPrimer
AY0426984Dinucleotide(GA)612156..167321  bpPrimer
AY0426985Dinucleotide(GA)1836170..205321  bpPrimer
AY0427001Dinucleotide(CT)816160..175314  bpPrimer
AY0427002Dinucleotide(TC)1020177..196314  bpPrimer
AY0427003Composite(CT)7(C)1024209..232314  bpPrimer
AY0426971Dinucleotide(GA)81681..96268  bpPrimer
AY0426972Dinucleotide(GA)918171..188268  bpPrimer
AY0426973Dinucleotide(GA)612216..227268  bpPrimer
AJ5343661Tetranucleotide(CATA)2288373..460574  bpPrimer
AY0427041Dinucleotide(GT)81636..51375  bpPrimer
AY0427042Dinucleotide(TG)61281..92375  bpPrimer
AY0427043Dinucleotide(TG)714317..330375  bpPrimer
AF0696751Tetranucleotide(GCCT)62436..59229  bpPrimer
AF0696752Tetranucleotide(CTGC)52062..81229  bpPrimer
AF0696753Composite(CTGT)13(CTGC)57298..169229  bpPrimer
AY0427021Dinucleotide(GA)3264222..285409  bpPrimer
AY0427022Dinucleotide(AG)2040287..326409  bpPrimer
EU0099541Dinucleotide(CA)7144153..41664890  bpPrimer
AF3932001Tetranucleotide(ATCT)728171..198393  bpPrimer
AY0427131Dinucleotide(GA)153023..52507  bpPrimer
AY0427132Dinucleotide(AG)71454..67507  bpPrimer
AY0427133Dinucleotide(AG)112270..91507  bpPrimer
AY0427134Dinucleotide(AG)71494..107507  bpPrimer
AF3931861Tetranucleotide(ACAG)93698..133436  bpPrimer
AF3931862Tetranucleotide(AGAT)25100164..263436  bpPrimer
AF3931961Tetranucleotide(TATC)166476..139478  bpPrimer
AF3931962c*(CTAT)6(TC)10*43143..185478  bpPrimer
AY0427151Dinucleotide(GA)4284328..411539  bpPrimer
AF3931941Tetranucleotide(GCAG)520287..306576  bpPrimer
AF3931942Tetranucleotide(AGAT)30120313..432576  bpPrimer
AY0427061Composite(G)16(AG)73098..127427  bpPrimer
AY0427062Dinucleotide(AG)612176..187427  bpPrimer
AY0427063Dinucleotide(AG)612201..212427  bpPrimer
AY0427064Dinucleotide(AG)714215..228427  bpPrimer
AY0427065Dinucleotide(AG)714231..244427  bpPrimer
AY0427066Dinucleotide(AG)918247..264427  bpPrimer
AY0427067Dinucleotide(AG)816267..282427  bpPrimer
AY0427141Dinucleotide(CT)122427..50273  bpPrimer
AY0427142Dinucleotide(TA)112252..73273  bpPrimer
AY0427143Dinucleotide(TC)81682..97273  bpPrimer
AF3931991Tetranucleotide(ATCT)93696..131465  bpPrimer
AF3931992Tetranucleotide(TATC)520300..319465  bpPrimer
AY0426941Dinucleotide(AG)1122182..203530  bpPrimer
AY0426901Dinucleotide(GA)122493..116395  bpPrimer
AY0426902Dinucleotide(GA)50100137..236395  bpPrimer
AY0426903Dinucleotide(GA)714261..274395  bpPrimer
AF3931911Tetranucleotide(TCTA)4216860..227442  bpPrimer
AF3931912Tetranucleotide(TCTA)624232..255442  bpPrimer
AF3931913c*(TCTG)13(CTGT)7(TC)23*125288..412442  bpPrimer
EU0099551Dinucleotide(CA)21424166..42074923  bpPrimer
AY0427241Dinucleotide(TC)612309..320577  bpPrimer
AY0427242Dinucleotide(CT)816322..337577  bpPrimer
AY0427243Dinucleotide(GT)612416..427577  bpPrimer
EU0099531Dinucleotide(AT)612762..7735506  bpPrimer
EU0099532Mononucleotide(T)10101600..16095506  bpPrimer
EU0099533Composite(CT)6(CA)8284523..45505506  bpPrimer
EU0099534Dinucleotide(AC)19384811..48485506  bpPrimer
KF1634381Dinucleotide(CA)81673..88487  bpPrimer
KF1634382Dinucleotide(CA)61298..109487  bpPrimer
KF1634383Dinucleotide(CA)816196..211487  bpPrimer
KF1634384Dinucleotide(CA)816217..232487  bpPrimer
KF1634385Dinucleotide(CA)816238..253487  bpPrimer
KF1634386Dinucleotide(CA)612260..271487  bpPrimer
KF1634387Dinucleotide(CA)816278..293487  bpPrimer
KF1634388Dinucleotide(CA)714301..314487  bpPrimer
KF1634389Dinucleotide(CA)612324..335487  bpPrimer
AF1070321Dinucleotide(AG)183690..125239  bpPrimer
AF1070322Dinucleotide(AG)612133..144239  bpPrimer
AF1070361Dinucleotide(AC)3978211..288385  bpPrimer
AF3931921Tetranucleotide(TAGA)1976323..398487  bpPrimer
AF3931901Tetranucleotide(GATA)1976150..225276  bpPrimer
AF1070371Dinucleotide(GT)122425..48190  bpPrimer
AF0696761Tetranucleotide(TGTC)52019..38221  bpPrimer
AF0696762Tetranucleotide(CTGT)2811242..153221  bpPrimer
AF1070301Dinucleotide(AC)1734138..171470  bpPrimer
AY0427171Dinucleotide(AG)61221..32274  bpPrimer
AY0427172Dinucleotide(GA)2754160..213274  bpPrimer
AF3931951Tetranucleotide(AGAT)1248161..208420  bpPrimer
AF3931952Tetranucleotide(ACAG)520261..280420  bpPrimer
AY0427211Dinucleotide(AG)102059..78502  bpPrimer
AY0427212Dinucleotide(GA)816314..329502  bpPrimer
AY0427213Dinucleotide(AG)612335..346502  bpPrimer
AY0427214Dinucleotide(AG)2652351..402502  bpPrimer
AF1070381Dinucleotide(TG)714120..133294  bpPrimer
AF1070382Dinucleotide(GA)1326145..170294  bpPrimer
AY0427201Dinucleotide(CT)1938111..148257  bpPrimer
AY0427111Dinucleotide(AG)204074..113567  bpPrimer
AY0427112Dinucleotide(AG)816133..148567  bpPrimer
AY0427121Dinucleotide(GA)112258..79285  bpPrimer
AY0427122Dinucleotide(GA)102087..106285  bpPrimer
AY0427123Dinucleotide(AG)1224108..131285  bpPrimer
AY0427221c*(TG)9(AG)22(GAAA)11*10542..146229  bpPrimer
AY0426931Trinucleotide(CTG)72115..35403  bpPrimer
AY0426932Dinucleotide(AG)1122192..213403  bpPrimer
AY0426933Dinucleotide(GA)1428219..246403  bpPrimer
AY0426934Dinucleotide(GA)2040253..292403  bpPrimer
AY0426911Dinucleotide(GA)2142220..261287  bpPrimer
AY0426921Dinucleotide(GA)1224195..218431  bpPrimer
AY0427161Dinucleotide(AG)1326119..144356  bpPrimer
AY0427162Dinucleotide(GA)612146..157356  bpPrimer
AY0427231Dinucleotide(CT)2346137..182289  bpPrimer
AY0427181Tetranucleotide(GATA)624246..269355  bpPrimer
AY0427182Dinucleotide(GA)2040278..317355  bpPrimer
AF3931841Tetranucleotide(ATCT)27108100..207416  bpPrimer
AF3931842Tetranucleotide(ATCT)1248216..263416  bpPrimer
AF3931843Tetranucleotide(TCAT)832273..304416  bpPrimer
AY0427191Dinucleotide(AG)1734103..136255  bpPrimer
AY0427192Dinucleotide(AG)1020139..158255  bpPrimer
AY0427193Dinucleotide(AG)1734167..200255  bpPrimer
AF3931891Tetranucleotide(CTGT)728246..273554  bpPrimer
AF3931892Tetranucleotide(TATC)35140326..465554  bpPrimer
AF1070291Dinucleotide(GT)714112..125299  bpPrimer
AF1070292Dinucleotide(TG)918143..160299  bpPrimer
AY0426991Trinucleotide(TTG)515132..146513  bpPrimer
AY0426992Trinucleotide(TTG)618177..194513  bpPrimer
AY0426993Mononucleotide(C)1313299..311513  bpPrimer
AY0426994Mononucleotide(C)1717363..379513  bpPrimer
AY0426995Mononucleotide(G)1313476..488513  bpPrimer
AY0427071Dinucleotide(GA)255098..147285  bpPrimer
AY0427072Dinucleotide(AG)1224151..174285  bpPrimer
AF3931931Composite(TGTC)11(TATC)14100233..332482  bpPrimer
AF3931932Dinucleotide(AG)714411..424482  bpPrimer
AF3931933Dinucleotide(AG)1020427..446482  bpPrimer
AF3931971Tetranucleotide(TATC)2510055..154355  bpPrimer
AY0427031Dinucleotide(CT)1020231..250365  bpPrimer
AY0427032Dinucleotide(TC)2346264..309365  bpPrimer
AY0427033Pentanucleotide(TCTCC)735311..345365  bpPrimer
AY0427081Dinucleotide(CT)714149..162550  bpPrimer
AY0427082Dinucleotide(CT)1224191..214550  bpPrimer
AF0696771Tetranucleotide(GTCT)52036..55132  bpPrimer
AF0696791Tetranucleotide(ATGT)176825..92231  bpPrimer
AF0696792Dinucleotide(GT)81699..114231  bpPrimer
AF0696793Tetranucleotide(TCTG)1768120..187231  bpPrimer
AY0427101Dinucleotide(GA)714426..439604  bpPrimer
AY0427102Dinucleotide(GA)612462..473604  bpPrimer
AY0427103Dinucleotide(AG)1938475..512604  bpPrimer
AY0427104Dinucleotide(AG)714515..528604  bpPrimer
AF0696801Tetranucleotide(TGTC)239223..114162  bpPrimer
EF0425961Dinucleotide(TG)53106240..345442  bpPrimer
KF1634391Dinucleotide(CA)1020149..168233  bpPrimer
AF3931871Tetranucleotide(TAGA)30120221..340483  bpPrimer
AF1070311Dinucleotide(TC)183662..97202  bpPrimer
AF0696741Composite(AGAC)36(AG)615658..213305  bpPrimer
AF0696742Dinucleotide(AG)714230..243305  bpPrimer
AY0426961Dinucleotide(GA)1326279..304350  bpPrimer
AF1070341Dinucleotide(CA)132636..61532  bpPrimer
AF1070351Dinucleotide(AC)3468119..186290  bpPrimer
AF1070352Dinucleotide(AC)1224191..214290  bpPrimer
AF3931881Tetranucleotide(ATAG)31124264..387470  bpPrimer
AF3931981Tetranucleotide(TATC)52095..114393  bpPrimer
AF3931982Tetranucleotide(ATCT)35140116..255393  bpPrimer
AF3931851Tetranucleotide(AGAT)218497..180461  bpPrimer
AF3931852Tetranucleotide(GATA)624234..257461  bpPrimer
EU0099521Mononucleotide(T)10101600..16095554  bpPrimer
EU0099522Composite(CT)6(CA)11344523..45565554  bpPrimer
EU0099523Dinucleotide(AC)34684829..48965554  bpPrimer
AF1070331Trinucleotide(CAA)515120..134356  bpPrimer
AF1070332Dinucleotide(TA)612163..174356  bpPrimer
AY0427011Dinucleotide(AG)816125..140255  bpPrimer
AY0427012Dinucleotide(GA)2142142..183255  bpPrimer
AY0427051Dinucleotide(CA)816270..285520  bpPrimer
AY0427052Dinucleotide(AC)1326287..312520  bpPrimer
AY0427053Mononucleotide(G)1717504..520520  bpPrimer
AY0426951Dinucleotide(AT)714325..338531  bpPrimer
AY0426952Dinucleotide(CT)1122368..389531  bpPrimer
 
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