Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Merlangius merlangus [17]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AM2309311Tetranucleotide(TCTA)2184145..228317  bpPrimer
AM2309271Tetranucleotide(ATCT)1144162..205246  bpPrimer
X874611Dinucleotide(AC)61258..69264  bpPrimer
X874612Trinucleotide(GGA)1339113..151264  bpPrimer
X874613Trinucleotide(GAG)721153..173264  bpPrimer
X874614Trinucleotide(GGA)618176..193264  bpPrimer
AM2309291Tetranucleotide(GGAT)52092..111257  bpPrimer
AM2309281Tetranucleotide(CTAT)1560114..173242  bpPrimer
AM2309251Dinucleotide(CA)61234..45319  bpPrimer
AM2309252Dinucleotide(TC)91893..110319  bpPrimer
X874631Dinucleotide(GT)5010047..146177  bpPrimer
AM2309301Tetranucleotide(CTAT)93696..131237  bpPrimer
X874621Dinucleotide(TG)6012022..141222  bpPrimer
X874681Dinucleotide(TG)132646..71272  bpPrimer
X874682Dinucleotide(GT)122473..96272  bpPrimer
AM2309331Tetranucleotide(ATAG)1768248..315459  bpPrimer
AM2309261Composite(AGAC)25(AGAT)1214841..188254  bpPrimer
X874651Dinucleotide(CA)346828..95147  bpPrimer
AM2309231Tetranucleotide(TATC)37148130..277363  bpPrimer
AM2309321Tetranucleotide(AGAC)1664295..358481  bpPrimer
X874661Dinucleotide(GT)193818..55131  bpPrimer
X874662Dinucleotide(TG)163257..88131  bpPrimer
 
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