Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Puntius denisonii [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
EU2728981Dinucleotide(GT)612144..155257  bpPrimer
EU2728982Dinucleotide(TG)1326175..200257  bpPrimer
EU2728983Dinucleotide(TG)612203..214257  bpPrimer
EU2728951Dinucleotide(AC)153084..113164  bpPrimer
EU2728971Dinucleotide(AC)112295..116203  bpPrimer
EU2728972Dinucleotide(AC)1632120..151203  bpPrimer
EU2728961Dinucleotide(TG)71474..87164  bpPrimer
EU2728962Dinucleotide(TG)1632106..137164  bpPrimer
DQ7800291Dinucleotide(TG)112253..74136  bpPrimer
DQ7800292Dinucleotide(CA)61279..90136  bpPrimer
DQ7800281Dinucleotide(CA)91816..33116  bpPrimer
DQ7800311Dinucleotide(GT)193827..64117  bpPrimer
DQ7800301Dinucleotide(CA)193832..69165  bpPrimer
EU2729011Dinucleotide(GT)173439..72166  bpPrimer
EU2729001Dinucleotide(CA)112253..74115  bpPrimer
EU2728991Dinucleotide(CA)132681..106148  bpPrimer
EU2728992Dinucleotide(AC)612111..122148  bpPrimer
 
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