Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Maylandia zebra [7]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
X997831Dinucleotide(GT)59118124..241354  bpPrimer
X997832Mononucleotide(T)1616244..259354  bpPrimer
X997881Dinucleotide(TG)61224..35212  bpPrimer
X997861Dinucleotide(TG)112258..79186  bpPrimer
X997862Dinucleotide(TG)61286..97186  bpPrimer
X997851Dinucleotide(TG)1224307..330372  bpPrimer
X997871Dinucleotide(TC)91873..90139  bpPrimer
X997891Dinucleotide(TG)61221..32169  bpPrimer
X997841Dinucleotide(TG)4182190..271429  bpPrimer
 
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