Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Hemibagrus nemurus [6]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AY8602141Trinucleotide(TGT)7218..28382  bpPrimer
AY8602142Trinucleotide(AAC)515358..372382  bpPrimer
AY8602121Trinucleotide(GTT)51510..24577  bpPrimer
AY8602122Composite(AAGG)5(GA)1346112..157577  bpPrimer
AY8602123Tetranucleotide(AGAT)1560200..259577  bpPrimer
AY8602124Dinucleotide(CA)1632394..425577  bpPrimer
AF4625811Dinucleotide(TC)163216..47494  bpPrimer
AF4625812Dinucleotide(CA)2040294..333494  bpPrimer
AF4625813Dinucleotide(CA)612372..383494  bpPrimer
AF4625814Trinucleotide(CCT)721389..409494  bpPrimer
AF4622651Dinucleotide(CT)6124..15465  bpPrimer
AF4622652Dinucleotide(CA)1020127..146465  bpPrimer
AF4622653Dinucleotide(GA)714368..381465  bpPrimer
AF4622654Dinucleotide(AG)612447..458465  bpPrimer
AY8522571Dinucleotide(AG)71413..26453  bpPrimer
AY8522572Tetranucleotide(CAAA)52082..101453  bpPrimer
AY8522573Dinucleotide(CT)816425..440453  bpPrimer
AF3252461Dinucleotide(AC)132629..54577  bpPrimer
AF3252462Dinucleotide(CA)163256..87577  bpPrimer
 
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