Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Pangasius pangasius [28]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
DQ8356331Dinucleotide(TG)61254..65362  bpPrimer
DQ8356431Dinucleotide(TC)2142113..154206  bpPrimer
DQ8356432Dinucleotide(CA)1530162..191206  bpPrimer
DQ8356301Dinucleotide(TC)81698..113374  bpPrimer
DQ8356411Dinucleotide(TC)112290..111198  bpPrimer
DQ8356281Dinucleotide(TG)714137..150315  bpPrimer
DQ8356381Dinucleotide(GA)153092..121257  bpPrimer
DQ8356231Dinucleotide(TC)183664..99536  bpPrimer
DQ8356241Trinucleotide(TAC)123682..117161  bpPrimer
DQ8356242Trinucleotide(CTA)515119..133161  bpPrimer
DQ8356361Dinucleotide(GA)61255..66553  bpPrimer
DQ8356362Dinucleotide(GA)102085..104553  bpPrimer
DQ8356261Dinucleotide(GT)122438..6185  bpPrimer
DQ8356401Dinucleotide(AC)1224156..179317  bpPrimer
DQ8356181Dinucleotide(CA)153013..42157  bpPrimer
DQ8356201Dinucleotide(GT)1632134..165353  bpPrimer
DQ8356321Dinucleotide(TG)61237..48231  bpPrimer
DQ8356322Dinucleotide(GA)142890..117231  bpPrimer
DQ8356221Dinucleotide(TC)1224211..234288  bpPrimer
DQ8356222Dinucleotide(TC)714237..250288  bpPrimer
DQ8356341Dinucleotide(AC)1836127..162406  bpPrimer
DQ8356342Dinucleotide(GA)612335..346406  bpPrimer
DQ8356343Dinucleotide(GA)1224371..394406  bpPrimer
DQ8356451Dinucleotide(AG)183644..79596  bpPrimer
DQ8356311Dinucleotide(CA)1224167..190265  bpPrimer
DQ8356312Dinucleotide(GA)1428197..224265  bpPrimer
DQ8356191Dinucleotide(GT)2142185..226275  bpPrimer
DQ8356421Dinucleotide(GT)122459..82374  bpPrimer
DQ8356251Dinucleotide(TC)61283..94127  bpPrimer
DQ8356252Dinucleotide(CT)122496..119127  bpPrimer
DQ8356441Composite(TG)22(AG)106453..116254  bpPrimer
DQ8356351Dinucleotide(AG)1428161..188374  bpPrimer
DQ8356352Dinucleotide(TG)1836289..324374  bpPrimer
DQ8356271Dinucleotide(TC)1428179..206234  bpPrimer
DQ8356391Dinucleotide(GA)1734120..153381  bpPrimer
DQ8356392Dinucleotide(AG)612155..166381  bpPrimer
DQ8356393Mononucleotide(G)1212172..183381  bpPrimer
DQ8356291Dinucleotide(GT)61245..56143  bpPrimer
DQ8356292Dinucleotide(GA)183662..97143  bpPrimer
DQ8356371Dinucleotide(TC)612362..373435  bpPrimer
DQ8356372Dinucleotide(CT)1428375..402435  bpPrimer
 
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