Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Gasterosteus aculeatus [20]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ3118571Trinucleotide(GAA)72193..113806  bpPrimer
AJ0103551Dinucleotide(AC)1836110..145436  bpPrimer
AJ0103541Dinucleotide(TG)2448244..291690  bpPrimer
AJ3118591Dinucleotide(CA)142826..53706  bpPrimer
AJ3118661Dinucleotide(CA)71497..110491  bpPrimer
AJ3118662Dinucleotide(AC)1428112..139491  bpPrimer
AJ3118581Dinucleotide(CA)142833..60570  bpPrimer
AJ3118582Dinucleotide(CT)714297..310570  bpPrimer
AJ0103581Dinucleotide(TG)71492..105273  bpPrimer
AJ0103582Dinucleotide(GT)2550107..156273  bpPrimer
AJ0103583Dinucleotide(GA)612169..180273  bpPrimer
AJ3118601Dinucleotide(TG)816228..243664  bpPrimer
AJ3118602Dinucleotide(TG)2652406..457664  bpPrimer
AJ0103521Dinucleotide(CA)3060229..288466  bpPrimer
AJ0103591Dinucleotide(AC)204069..108315  bpPrimer
AJ0103611Dinucleotide(CA)4590318..407471  bpPrimer
AJ3118621Dinucleotide(AC)2040157..196383  bpPrimer
AJ3118611Dinucleotide(AC)1224484..507540  bpPrimer
AJ3118651Dinucleotide(AC)1224196..219692  bpPrimer
AJ3118631Dinucleotide(GT)816252..267587  bpPrimer
AJ3118632Dinucleotide(TG)1224282..305587  bpPrimer
AJ3118641Dinucleotide(TG)122467..90386  bpPrimer
AJ0103601Dinucleotide(AC)2346311..356482  bpPrimer
AJ0103531Dinucleotide(CA)4080105..184338  bpPrimer
AJ0103532Trinucleotide(GCT)515204..218338  bpPrimer
AJ0103561Dinucleotide(TG)2142220..261321  bpPrimer
AJ0103571Dinucleotide(CA)2040125..164356  bpPrimer
 
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