Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Fundulus heteroclitus [5]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KT0016251Trinucleotide(TCT)51587..101296  bpPrimer
KT0016252Trinucleotide(CTT)1236118..153296  bpPrimer
KT0016253Tetranucleotide(TATC)624231..254296  bpPrimer
KT0016254Tetranucleotide(CTAT)936258..293296  bpPrimer
KT0017001Dinucleotide(CA)10203..221078  bpPrimer
KT0017002Dinucleotide(AC)612341..3521078  bpPrimer
KT0017003Dinucleotide(AC)1122692..7131078  bpPrimer
KT0017004Dinucleotide(AC)612720..7311078  bpPrimer
KT0018861Trinucleotide(TAC)7219..29457  bpPrimer
KT0018862Trinucleotide(ACT)51581..95457  bpPrimer
KT0018863Trinucleotide(TAC)515113..127457  bpPrimer
KT0016191Dinucleotide(AG)1122361..382546  bpPrimer
KT0016192Dinucleotide(AG)714385..398546  bpPrimer
KT0016193Dinucleotide(AG)918413..430546  bpPrimer
KT0016194Dinucleotide(AG)714475..488546  bpPrimer
KT0017731Dinucleotide(CA)1020121..140701  bpPrimer
KT0017732Trinucleotide(TAG)515448..462701  bpPrimer
 
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