Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Eretmodus cyanostictus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ4070621Dinucleotide(AC)1020102..121157  bpPrimer
AJ4070731Dinucleotide(AC)71475..88142  bpPrimer
AJ4070521Dinucleotide(GT)173447..80140  bpPrimer
AJ4070522Mononucleotide(T)131383..95140  bpPrimer
AJ4070671Dinucleotide(CA)1224239..262342  bpPrimer
AJ4070651Dinucleotide(AC)714121..134199  bpPrimer
AJ4070721Dinucleotide(AC)71475..88142  bpPrimer
AJ4070551Dinucleotide(TG)1020255..274315  bpPrimer
AJ4070561Dinucleotide(TG)1020255..274315  bpPrimer
AJ4070581Dinucleotide(CA)1326128..153331  bpPrimer
AJ4070681Dinucleotide(CA)612226..237348  bpPrimer
AJ4070682Dinucleotide(CA)1428241..268348  bpPrimer
AJ4070771Dinucleotide(CA)153099..128166  bpPrimer
AJ4070501Dinucleotide(CA)91895..112180  bpPrimer
AJ4070631Dinucleotide(AC)1632102..133169  bpPrimer
 
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