Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Colossoma macropomum [45]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KY3791231Tetranucleotide(GATA)1040124..163320  bpPrimer
KY3791121Dinucleotide(AC)122477..100678  bpPrimer
KY3791141Dinucleotide(GT)612686..6971090  bpPrimer
KY3791331Tetranucleotide(AGTG)728141..168477  bpPrimer
KY3791181Tetranucleotide(GATA)1664337..400466  bpPrimer
KY3791161Trinucleotide(ATC)7211422..14421572  bpPrimer
KY3791251Trinucleotide(TCA)1236282..317404  bpPrimer
KY3791371Trinucleotide(ATA)103043..72505  bpPrimer
KY3791151Trinucleotide(GAT)824438..461978  bpPrimer
KY3791381Tetranucleotide(ATCT)936216..251421  bpPrimer
KY3791071Trinucleotide(CTG)721361..381460  bpPrimer
KY3791311Dinucleotide(AC)1020258..277478  bpPrimer
KY3791171Dinucleotide(CA)1224172..195424  bpPrimer
KY3791301Dinucleotide(GT)1428235..262293  bpPrimer
KY3791271Trinucleotide(ATT)1030157..186356  bpPrimer
KY3791441Tetranucleotide(ATAC)93685..120411  bpPrimer
KY3791051Trinucleotide(TTA)618755..7721079  bpPrimer
KY3791061Trinucleotide(CTC)515252..2661441  bpPrimer
KY3791461Dinucleotide(TG)1734173..206274  bpPrimer
KY3791281Dinucleotide(CA)173454..87183  bpPrimer
KY3791451Dinucleotide(GA)1122297..318399  bpPrimer
KY3791401Dinucleotide(TG)918411..428542  bpPrimer
KY3791391Trinucleotide(CAG)824143..166443  bpPrimer
KY3791392Mononucleotide(A)1010377..386443  bpPrimer
KY3791471Dinucleotide(CA)91890..107338  bpPrimer
KY3791421Dinucleotide(GT)1326206..231295  bpPrimer
KY3791221Composite(TTTA)5(TGTA)644147..190357  bpPrimer
KY3791211Tetranucleotide(GATA)1144182..225312  bpPrimer
KY3791241Dinucleotide(TG)91858..75319  bpPrimer
KY3791242Mononucleotide(A)1111242..252319  bpPrimer
KY3791291Trinucleotide(AAT)1030200..229492  bpPrimer
KY3791292Mononucleotide(A)1313378..390492  bpPrimer
KY3791261Tetranucleotide(TAGA)1248124..171483  bpPrimer
KY3791091Trinucleotide(GAT)515409..423560  bpPrimer
KY3791431Dinucleotide(GA)1632215..246364  bpPrimer
KY3791351Mononucleotide(A)1010134..143501  bpPrimer
KY3791352Dinucleotide(AG)1224375..398501  bpPrimer
KY3791353Dinucleotide(AG)1428474..501501  bpPrimer
KY3791341Dinucleotide(CT)102092..111506  bpPrimer
KY3791201Dinucleotide(TG)122448..71436  bpPrimer
KY3791111Trinucleotide(CTA)515113..127716  bpPrimer
KY3791191Dinucleotide(CT)102033..52372  bpPrimer
KY3791192Dinucleotide(AG)612338..349372  bpPrimer
KY3791081Dinucleotide(CT)91838..551270  bpPrimer
KY3791131Dinucleotide(AG)61252..63681  bpPrimer
KY3791031Dinucleotide(AG)612320..331534  bpPrimer
KY3791361Trinucleotide(TTA)1236275..310413  bpPrimer
KY3791411Dinucleotide(GT)816109..124395  bpPrimer
KY3791101Trinucleotide(GAG)618775..792825  bpPrimer
KY3791041Pentanucleotide(CTCCA)525786..810902  bpPrimer
KY3791321Dinucleotide(AC)1836177..212262  bpPrimer
 
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