Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Chionodraco hamatus [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
KC8557261Trinucleotide(GCA)82440..63105  bpPrimer
KC8557271Dinucleotide(AC)81692..107164  bpPrimer
KC8557181Dinucleotide(CA)102054..73122  bpPrimer
KC8557241Trinucleotide(TGA)61842..59109  bpPrimer
KC8557251Dinucleotide(GT)142854..81138  bpPrimer
KC8557281Trinucleotide(TCT)82440..63119  bpPrimer
KC8557282Trinucleotide(TTC)61865..82119  bpPrimer
KC8557201Dinucleotide(GA)71437..5099  bpPrimer
KC8557221Trinucleotide(TTG)61844..6199  bpPrimer
KC8557171Trinucleotide(CTG)123654..89126  bpPrimer
KC8557301Dinucleotide(CT)612118..129262  bpPrimer
KC8557302Dinucleotide(TC)714182..195262  bpPrimer
KC8557211Trinucleotide(TAA)72137..57137  bpPrimer
KC8557231Trinucleotide(GAT)82454..77203  bpPrimer
KC8557291Trinucleotide(GAT)82478..101162  bpPrimer
 
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