Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Campylomormyrus numenius [22]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ8653631Dinucleotide(AC)122455..78196  bpPrimer
AJ8653641Dinucleotide(TC)265277..128204  bpPrimer
AJ8653671Tetranucleotide(CATC)1248122..169215  bpPrimer
AJ8653561Dinucleotide(AC)1224114..137201  bpPrimer
AJ8653571Dinucleotide(AC)91868..85208  bpPrimer
AJ8653681Dinucleotide(TC)1632234..265363  bpPrimer
AJ8653591Dinucleotide(AC)714175..188282  bpPrimer
AJ8653661Dinucleotide(CT)1326167..192228  bpPrimer
AJ8653551Dinucleotide(AC)71431..44189  bpPrimer
AJ8653552Dinucleotide(AC)61257..68189  bpPrimer
AJ8653651Dinucleotide(TC)224468..111213  bpPrimer
AJ8653691Dinucleotide(TC)1632325..356465  bpPrimer
AJ8653621Dinucleotide(AC)163283..114180  bpPrimer
AJ8653541Dinucleotide(TC)122463..86180  bpPrimer
AJ8653531Dinucleotide(CA)183639..74156  bpPrimer
AJ8653601Dinucleotide(CT)2040283..322425  bpPrimer
AJ8653581Dinucleotide(TC)1428114..141221  bpPrimer
AJ8653582Dinucleotide(CA)612145..156221  bpPrimer
AJ8653521Dinucleotide(AC)153033..62135  bpPrimer
 
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