Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Astyanax altiparanae [11]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
JQ2463611Dinucleotide(GT)816476..491613  bpPrimer
JQ2463681Dinucleotide(CA)91858..75334  bpPrimer
JQ2463591Dinucleotide(AC)1734223..256375  bpPrimer
JQ2463651Dinucleotide(CA)142838..65183  bpPrimer
JQ2463652Dinucleotide(CA)91870..87183  bpPrimer
JQ2463641Mononucleotide(G)111154..64413  bpPrimer
JQ2463642Dinucleotide(AC)1020295..314413  bpPrimer
JQ2463631Dinucleotide(CT)61258..69429  bpPrimer
JQ2463632Dinucleotide(AC)173492..125429  bpPrimer
JQ2463691Dinucleotide(TG)816136..151571  bpPrimer
JQ2463671Dinucleotide(GT)918208..225307  bpPrimer
JQ2463661Dinucleotide(CA)1224261..284345  bpPrimer
JQ2463601Dinucleotide(AC)1224192..215297  bpPrimer
 
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