Fish and Shellfish Microsatellite Database

 
  Home Overview Analysis & primer Motif search Locus finder  Repeats map Statistics
 
  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Anguilla japonica [14]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ8449111Dinucleotide(TG)142845..72109  bpPrimer
AJ8449101Dinucleotide(AC)91824..4182  bpPrimer
AJ2975991Dinucleotide(TG)1734212..245263  bpPrimer
AJ2976051Dinucleotide(GA)173431..64209  bpPrimer
AJ2976041Dinucleotide(GT)214224..65338  bpPrimer
AM0627631Dinucleotide(GT)81623..38108  bpPrimer
AM0627632Dinucleotide(GT)102041..60108  bpPrimer
AM0627611Dinucleotide(TG)153046..75112  bpPrimer
AJ2976031Dinucleotide(TG)1938117..154217  bpPrimer
AJ2976001Dinucleotide(GA)153090..119172  bpPrimer
AM0627621Dinucleotide(TG)71439..5276  bpPrimer
AJ2976011Dinucleotide(GT)1020109..128184  bpPrimer
AJ8449131Dinucleotide(GT)81623..38108  bpPrimer
AJ8449132Dinucleotide(GT)102041..60108  bpPrimer
AJ2976021Dinucleotide(GT)163241..72169  bpPrimer
 
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