Fish and Shellfish Microsatellite Database

 
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  Top 10 FishMicrosat Families  
Family Species
Cyprinidae 39
Serranidae15
Scombridae 11
Pomacentridae 9
Salmonidae9
Cichlidae 9
Bagridae8
Lutjanidae8
Poeciliidae7
Gobiidae6
 
  Top 10 FishMicrosat Species  
Species Records
Cyprinus carpio42000
Lates calcarifer3681
Ctenopharyngodon idella3363
Oncorhynchus mykiss2674
Hypophthalmichthys molitrix1365
Carassius auratus717
Hypophthalmichthys nobilis640
Labeo rohita637
Penaeus monodon618
Pagrus major597
  Repeats analysis and Primer design
This module provides information about repeats (type, number, sequence) and enables to design primers for selected locus. In order to view the information about repeats and to design primers, alphabets index facilitates to display the list of species along with total specimen records in square bracket. A clicking over event on the species name provides information in table for microsatellite sequences. The last column of the table showing primer design link and mouse clicking upon that link leads further for designing of suitable pair of primers.

Acrossocheilus paradoxus [31]
Accession No. SSR No. SSR type SSR motif Size Position Sequence length Primer design
AJ4385821Dinucleotide(TA)1938263..300364  bpPrimer
AJ4385791Dinucleotide(TA)816261..276317  bpPrimer
AJ4385831Dinucleotide(AC)193852..89300  bpPrimer
AJ4385801Dinucleotide(TA)612153..164266  bpPrimer
AJ4385802Dinucleotide(AT)612166..177266  bpPrimer
JQ8244171Pentanucleotide(AAGGC)525151..175522  bpPrimer
JQ8244161Dinucleotide(GT)91830..47493  bpPrimer
JQ8244141Dinucleotide(GT)326463..126507  bpPrimer
JQ8244142Dinucleotide(TG)1224414..437507  bpPrimer
JQ8243971Dinucleotide(AG)918198..215388  bpPrimer
JQ8243972Composite(AG)18(TG)1668218..285388  bpPrimer
JQ8244101Dinucleotide(AC)1326464..489792  bpPrimer
JQ8244102Dinucleotide(AC)1428492..519792  bpPrimer
JQ8243981Dinucleotide(GT)1836294..329511  bpPrimer
JQ8244041Dinucleotide(CT)153092..121514  bpPrimer
JQ8244042Dinucleotide(TG)50100184..283514  bpPrimer
JQ8244011Dinucleotide(TG)499814..111402  bpPrimer
JQ8244012Dinucleotide(GT)1326298..323402  bpPrimer
JQ8244151Dinucleotide(AC)612102..113505  bpPrimer
JQ8244152Dinucleotide(GA)2958400..457505  bpPrimer
JQ8244111Mononucleotide(T)171797..113413  bpPrimer
JQ8244112Dinucleotide(GT)4488218..305413  bpPrimer
JQ8244091Dinucleotide(GA)918284..301569  bpPrimer
JQ8243941Dinucleotide(CA)1428234..261417  bpPrimer
JQ8243942Dinucleotide(CT)2040280..319417  bpPrimer
JQ8244031Dinucleotide(TG)918269..286421  bpPrimer
JQ8243991Dinucleotide(GT)3570533..602710  bpPrimer
JQ8244121Dinucleotide(GT)102037..56365  bpPrimer
JQ8244122Dinucleotide(GT)346859..126365  bpPrimer
JQ8244123Dinucleotide(GT)612141..152365  bpPrimer
JQ8244124Dinucleotide(GT)3978155..232365  bpPrimer
JQ8244061Composite(GT)13(GA)2984156..239552  bpPrimer
JQ8244081Dinucleotide(GT)714211..224340  bpPrimer
JQ8244001Composite(CA)19(CT)309850..147387  bpPrimer
JQ8244051Dinucleotide(AC)2550292..341416  bpPrimer
JQ8244071Dinucleotide(AC)2754451..504597  bpPrimer
JQ8244021Dinucleotide(AC)1122551..572792  bpPrimer
JQ8243961c*(CTCA)5(CA)12*4275..116356  bpPrimer
JQ8243962c*(AC)6(TC)9(CTCA)5*(CA)13*(CT)683170..252356  bpPrimer
JQ8243963Composite(CA)9(CT)2364267..330356  bpPrimer
 
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